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ASM2337471v1

Organism name:
Burkholderia cepacia (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2011Ycf427V
BioSample:
SAMN20348580
BioProject:
PRJNA748922
Submitter:
University Hospital Muenster
Date:
2022/05/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_023374715.1 (latest)
RefSeq assembly accession:
GCF_023374715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. SMRT Link V9
Expected final version:
yes
Genome coverage:
240x
Sequencing technology:
PacBio Sequel

IDs: 12725531 [UID] 33282908 [GenBank] 33408908 [RefSeq]

See Genome Information for Burkholderia cepacia

There are 324 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/02/2023 01:32:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,775
CDSs (total)::7,684
Genes (coding)::7,566
CDSs (with protein)::7,566
Genes (RNA)::91
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::4
Pseudo Genes (total)::118
CDSs (without protein)::118
Pseudo Genes (ambiguous residues)::0 of 118
Pseudo Genes (frameshifted)::42 of 118
Pseudo Genes (incomplete)::96 of 118
Pseudo Genes (internal stop)::10 of 118
Pseudo Genes (multiple problems)::27 of 118
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,502,540
Total ungapped length8,502,540
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023374725.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP090737.1=NZ_CP090737.1
Chromosome 2CP090738.1=NZ_CP090738.1
Chromosome 3CP090739.1=NZ_CP090739.1

Assembly statistics

MoleculeTotal
Length
All8,502,540
Chromosome 13,639,150
Chromosome 23,504,726
Chromosome 31,358,664

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepaciaBurkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001411495.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001411495.1Burkholderia cepaciatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5186.0785.03
Best-match type97.5186.0785.03

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna