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ASM2382314v1

Organism name:
Lactiplantibacillus pentosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 9D3
BioSample:
SAMN19769714
BioProject:
PRJNA739022
Submitter:
Mahidol University
Date:
2022/06/21
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_023823145.1 (latest)
RefSeq assembly accession:
GCF_023823145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. recon 2; snippy v. 4.6.0
Expected final version:
yes
Genome coverage:
246.81x
Sequencing technology:
PacBio RSII; Illumina NextSeq

IDs: 13021171 [UID] 34019258 [GenBank] 34095688 [RefSeq]

See Genome Information for Lactiplantibacillus pentosus

Pathogen Detection Resources

There are 102 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Institute of Nutrition, Mahidol University, Nakhon Pathom 73170, Thailand.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/26/2023 02:32:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,480
CDSs (total)::3,380
Genes (coding)::3,324
CDSs (with protein)::3,324
Genes (RNA)::100
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::80
ncRNAs::4
Pseudo Genes (total)::57
CDSs (without protein)::56
Pseudo Genes (ambiguous residues)::0 of 57
Pseudo Genes (frameshifted)::25 of 57
Pseudo Genes (incomplete)::24 of 57
Pseudo Genes (internal stop)::18 of 57
Pseudo Genes (multiple problems)::10 of 57
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,812,583
Total ungapped length3,812,583
Total number of chromosomes and plasmids7

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023823155.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP077099.1=NZ_CP077099.1
Plasmid pLPE-2KCP077101.1=NZ_CP077101.1
Plasmid pLPE-7KCP077104.1=NZ_CP077104.1
Plasmid pLPE-9KCP077105.1=NZ_CP077105.1
Plasmid pLPE-12KCP077100.1=NZ_CP077100.1
Plasmid pLPE-58KCP077102.1=NZ_CP077102.1
Plasmid pLPE-70KCP077103.1=NZ_CP077103.1

Assembly statistics

MoleculeTotal
Length
All3,812,583
Chromosome 3,650,767
Plasmid pLPE-2K1,903
Plasmid pLPE-7K7,767
Plasmid pLPE-9K9,404
Plasmid pLPE-12K12,737
Plasmid pLPE-58K58,157
Plasmid pLPE-70K71,848

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus pentosusLactiplantibacillus pentosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004354685.1Lactiplantibacillus pentosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004354685.1Lactiplantibacillus pentosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9586.5889.17
Best-match type97.9586.5889.17

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna