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ASM2389609v1

Organism name:
Burkholderia vietnamiensis (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2017Y70983955
BioSample:
SAMN20348604
BioProject:
PRJNA748922
Submitter:
University Hospital Muenster
Date:
2022/06/23
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_023896095.1 (latest)
RefSeq assembly accession:
GCF_023896095.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAKEZW01
Assembly method:
HGAP v. SMRT Link V9
Expected final version:
yes
Genome coverage:
386x
Sequencing technology:
PacBio Sequel

IDs: 13058781 [UID] 34103328 [GenBank] 34203988 [RefSeq]

See Genome Information for Burkholderia vietnamiensis

Pathogen Detection Resources

There are 213 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/12/2022 15:47:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,891
CDSs (total)::5,800
Genes (coding)::5,694
CDSs (with protein)::5,694
Genes (RNA)::91
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::4
Pseudo Genes (total)::106
CDSs (without protein)::106
Pseudo Genes (ambiguous residues)::0 of 106
Pseudo Genes (frameshifted)::43 of 106
Pseudo Genes (incomplete)::85 of 106
Pseudo Genes (internal stop)::13 of 106
Pseudo Genes (multiple problems)::29 of 106
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,608,426
Total ungapped length6,608,426
Gaps between scaffolds0
Number of scaffolds5
Scaffold N502,145,025
Scaffold L502
Number of contigs5
Contig N502,145,025
Contig L502
Total number of chromosomes and plasmids4
Number of component sequences (WGS or clone)5

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023896105.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1JAKEZW010000001.1=NZ_JAKEZW010000001.10
Chromosome 2JAKEZW010000003.1=NZ_JAKEZW010000003.10
Chromosome 3JAKEZW010000002.1=NZ_JAKEZW010000002.10
Plasmid p1_2017Y70983955JAKEZW010000004.1=NZ_JAKEZW010000004.10
unplacedn/an/an/a1

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All6,608,42656,608,4262,145,02500
Chromosome 12,145,02512,145,0252,145,02500
Chromosome 21,111,72411,111,7241,111,72400
Chromosome 33,275,74713,275,7473,275,74700
Plasmid p1_2017Y7098395573,850173,85073,85000
unplaced2,08012,0802,08000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia vietnamiensisBurkholderia vietnamiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9690.2286.03
Best-match type98.9690.2286.03

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna