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ASM2397289v1

Organism name:
Lactiplantibacillus pentosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: KW1
BioSample:
SAMN29205040
BioProject:
PRJNA850900
Submitter:
Norwegian University of Life Sciences
Date:
2022/06/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_023972895.1 (latest)
RefSeq assembly accession:
GCF_023972895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. MAY-2022
Expected final version:
yes
Genome coverage:
124.0x
Sequencing technology:
MinION Oxford Nanopore Technologies

IDs: 13093521 [UID] 34232118 [GenBank] 34370978 [RefSeq]

See Genome Information for Lactiplantibacillus pentosus

There are 102 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Protein engineering and proteomics (PEP) group, NMBU, Norway

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/28/2023 05:36:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,539
CDSs (total)::3,448
Genes (coding)::3,346
CDSs (with protein)::3,346
Genes (RNA)::91
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::71
ncRNAs::4
Pseudo Genes (total)::104
CDSs (without protein)::102
Pseudo Genes (ambiguous residues)::0 of 104
Pseudo Genes (frameshifted)::60 of 104
Pseudo Genes (incomplete)::36 of 104
Pseudo Genes (internal stop)::14 of 104
Pseudo Genes (multiple problems)::7 of 104
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,860,943
Total ungapped length3,860,943
Total number of chromosomes and plasmids5

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023972905.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP099551.1=NZ_CP099551.1
Plasmid p1CP099552.1=NZ_CP099552.1
Plasmid p2CP099553.1=NZ_CP099553.1
Plasmid p3CP099554.1=NZ_CP099554.1
Plasmid p4CP099555.1=NZ_CP099555.1

Assembly statistics

MoleculeTotal
Length
All3,860,943
Chromosome 3,668,369
Plasmid p140,436
Plasmid p277,291
Plasmid p361,578
Plasmid p413,269

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus pentosusLactiplantibacillus pentosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003641185.1Lactiplantibacillus pentosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003641185.1Lactiplantibacillus pentosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8191.7396.47
Best-match type99.8191.7396.47

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna