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ASM2439779v1

Organism name:
Lactobacillus intestinalis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 6629
BioSample:
SAMN18709981
BioProject:
PRJNA721108
Submitter:
Institute of Subtropical Agriculture, Chinese Academy of Sciences
Date:
2022/07/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_024397795.1 (latest)
RefSeq assembly accession:
GCF_024397795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Link v. v5.0.1
Expected final version:
yes
Genome coverage:
462.0x
Sequencing technology:
PacBio Sequel

IDs: 13346701 [UID] 34855218 [GenBank] 34959228 [RefSeq]

See Genome Information for Lactobacillus intestinalis

There are 145 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/08/2023 06:07:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,924
CDSs (total)::1,850
Genes (coding)::1,807
CDSs (with protein)::1,807
Genes (RNA)::74
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::59
ncRNAs::3
Pseudo Genes (total)::43
CDSs (without protein)::43
Pseudo Genes (ambiguous residues)::0 of 43
Pseudo Genes (frameshifted)::16 of 43
Pseudo Genes (incomplete)::25 of 43
Pseudo Genes (internal stop)::9 of 43
Pseudo Genes (multiple problems)::6 of 43
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,038,712
Total ungapped length2,038,712
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_024397805.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP072983.1=NZ_CP072983.1
Plasmid unnamed1CP072984.1=NZ_CP072984.1
Plasmid unnamed2CP072985.1=NZ_CP072985.1

Assembly statistics

MoleculeTotal
Length
All2,038,712
Chromosome 1,699,754
Plasmid unnamed119,578
Plasmid unnamed2319,380

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus intestinalisLactobacillus intestinalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001435325.1Lactobacillus intestinalis DSM 6629suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001435325.1Lactobacillus intestinalissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9898.4499.89
Best-match type99.9898.4499.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna