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ASM2642755v1

Organism name:
Lacticaseibacillus rhamnosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: VHProbi F20
BioSample:
SAMN27162334
BioProject:
PRJNA821980
Submitter:
Nutrition &Health Technology Center
Date:
2022/11/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_026427555.1 (latest)
RefSeq assembly accession:
GCF_026427555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. Version 2.04
Expected final version:
yes
Genome coverage:
972.54x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 14555111 [UID] 37749238 [GenBank] 37862158 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

There are 635 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/08/2024 04:39:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,844
CDSs (total)::2,767
Genes (coding)::2,710
CDSs (with protein)::2,710
Genes (RNA)::77
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::59
ncRNAs::3
Pseudo Genes (total)::57
CDSs (without protein)::57
Pseudo Genes (ambiguous residues)::0 of 57
Pseudo Genes (frameshifted)::25 of 57
Pseudo Genes (incomplete)::29 of 57
Pseudo Genes (internal stop)::11 of 57
Pseudo Genes (multiple problems)::6 of 57
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,020,766
Total ungapped length3,020,766
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_026427565.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP094952.1=NZ_CP094952.1
Plasmid pAF20CP094953.1=NZ_CP094953.1

Assembly statistics

MoleculeTotal
Length
All3,020,766
Chromosome 3,006,636
Plasmid pAF2014,130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus rhamnosusLacticaseibacillus rhamnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5784.6985.61
Best-match type97.5784.6985.61

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna