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ASM2668389v1

Organism name:
Bifidobacterium animalis subsp. lactis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BP026
BioSample:
SAMN31882050
BioProject:
PRJNA905707
Submitter:
Hangzhou Medical College
Date:
2022/12/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_026683895.1 (latest)
RefSeq assembly accession:
GCF_026683895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.5.0
Expected final version:
yes
Genome coverage:
1632.3x
Sequencing technology:
Illumina NovaSeq PE150; Nanopore PromethION

IDs: 14706391 [UID] 38083558 [GenBank] 38209458 [RefSeq]

See Genome Information for Bifidobacterium animalis

There are 237 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/20/2024 05:21:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,617
CDSs (total)::1,553
Genes (coding)::1,539
CDSs (with protein)::1,539
Genes (RNA)::64
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::52
ncRNAs::3
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::6 of 14
Pseudo Genes (incomplete)::8 of 14
Pseudo Genes (internal stop)::1 of 14
Pseudo Genes (multiple problems)::1 of 14
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,935,214
Total ungapped length1,935,214
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_026683905.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP113363.1=NZ_CP113363.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,935,214

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium animalis subsp. lactisBifidobacterium animalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000022965.1Bifidobacterium animalis subsp. lactis DSM 10140type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000022965.1Bifidobacterium animalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7199.54
Best-match type99.9999.7199.54

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna