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ASM2819820v1

Organism name:
Enterobacter ludwigii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CM-TZ4
BioSample:
SAMN32745804
BioProject:
PRJNA923839
Submitter:
Zhejiang Academy of Agricultural Sciences
Date:
2023/01/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_028198205.1 (latest)
RefSeq assembly accession:
GCF_028198205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
unicycler v. 0.4.8
Expected final version:
yes
Genome coverage:
375.0x
Sequencing technology:
PacBio Sequel

IDs: 15639351 [UID] 40183888 [GenBank] 40193908 [RefSeq]

See Genome Information for Enterobacter ludwigii

Pathogen Detection Resources

There are 261 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from strawberry

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/26/2024 02:57:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,677
CDSs (total)::5,560
Genes (coding)::5,410
CDSs (with protein)::5,410
Genes (RNA)::117
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::84
ncRNAs::8
Pseudo Genes (total)::150
CDSs (without protein)::150
Pseudo Genes (ambiguous residues)::0 of 150
Pseudo Genes (frameshifted)::46 of 150
Pseudo Genes (incomplete)::112 of 150
Pseudo Genes (internal stop)::27 of 150
Pseudo Genes (multiple problems)::30 of 150
Pseudo Genes (short protein)::1 of 150
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,711,988
Total ungapped length5,711,988
Total number of chromosomes and plasmids6

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_028198215.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP116347.1=NZ_CP116347.1
Plasmid unnamed1CP116348.1=NZ_CP116348.1
Plasmid unnamed2CP116349.1=NZ_CP116349.1
Plasmid unnamed3CP116350.1=NZ_CP116350.1
Plasmid unnamed4CP116351.1=NZ_CP116351.1
Plasmid unnamed5CP116352.1=NZ_CP116352.1

Assembly statistics

MoleculeTotal
Length
All5,711,988
Chromosome 5,174,446
Plasmid unnamed1296,144
Plasmid unnamed2133,594
Plasmid unnamed361,089
Plasmid unnamed441,306
Plasmid unnamed55,409

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter ludwigiiEnterobacter ludwigii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019047005.1Enterobacter ludwigiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047005.1Enterobacter ludwigiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0078.9091.16
Best-match type99.0078.9091.16

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna