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ASM2889518v1

Organism name:
Thermoanaerobacterium sp. R66 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: R66
BioSample:
SAMN17278183
BioProject:
PRJNA691111
Submitter:
Mahidol University
Date:
2023/03/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_028895185.1 (latest)
RefSeq assembly accession:
GCF_028895185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAEUWW01
Assembly method:
Trycycler v. Jan-2021
Expected final version:
yes
Genome coverage:
247.0x
Sequencing technology:
Oxford Nanopore MinION; Illumina HiSeq

IDs: 16022191 [UID] 41115168 [GenBank] 41170128 [RefSeq]

See Genome Information for Thermoanaerobacterium sp. R66

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::01/26/2021 17:01:58
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::5.0
Genes (total)::2,583
CDSs (total)::2,506
Genes (coding)::2,464
CDSs (with protein)::2,464
Genes (RNA)::77
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::4, 5, 5 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::57
ncRNAs::5
Pseudo Genes (total)::42
CDSs (without protein)::42
Pseudo Genes (ambiguous residues)::0 of 42
Pseudo Genes (frameshifted)::19 of 42
Pseudo Genes (incomplete)::24 of 42
Pseudo Genes (internal stop)::11 of 42
Pseudo Genes (multiple problems)::11 of 42
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,566,847
Total ungapped length2,566,847
Number of contigs5
Contig N502,518,897
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,566,84752,566,8472,518,89700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermoanaerobacterium sp. R66Thermoanaerobacterium sp. R66

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000189775.3Thermoanaerobacterium xylanolyticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.2379.0180.02

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna