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ASM2901127v1

Organism name:
Lacticaseibacillus rhamnosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: VSI43
BioSample:
SAMN33275455
BioProject:
PRJNA934404
Submitter:
Seattle University
Date:
2023/03/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_029011275.1 (latest)
RefSeq assembly accession:
GCF_029011275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
trycycler v. v0.4.1
Expected final version:
yes
Genome coverage:
26.7415x
Sequencing technology:
Oxford Nanopore MinION

IDs: 16075961 [UID] 41241808 [GenBank] 41246098 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

There are 635 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_029011275.1-RS_2024_04_01
Annotation Date::04/01/2024 06:12:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,834
CDSs (total)::2,756
Genes (coding)::2,676
CDSs (with protein)::2,676
Genes (RNA)::78
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::60
ncRNAs::3
Pseudo Genes (total)::80
CDSs (without protein)::80
Pseudo Genes (ambiguous residues)::0 of 80
Pseudo Genes (frameshifted)::38 of 80
Pseudo Genes (incomplete)::39 of 80
Pseudo Genes (internal stop)::15 of 80
Pseudo Genes (multiple problems)::12 of 80
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,049,996
Total ungapped length3,049,996
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_029011285.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP118050.1=NZ_CP118050.1
Plasmid pLrVSI43_1CP118051.1=NZ_CP118051.1
Plasmid pLrVSI43_2CP118052.1=NZ_CP118052.1

Assembly statistics

MoleculeTotal
Length
All3,049,996
Chromosome 3,006,772
Plasmid pLrVSI43_139,974
Plasmid pLrVSI43_23,250

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus rhamnosusLacticaseibacillus rhamnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8995.0997.05
Best-match type99.8995.0997.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna