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ASM2971888v1

Organism name:
Enterobacter ludwigii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: RHB43-SE-C05
BioSample:
SAMN15488648
BioProject:
PRJNA605147
Submitter:
The REHAB Consortium
Date:
2023/04/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_029718885.1 (latest)
RefSeq assembly accession:
GCF_029718885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.4.4
Expected final version:
yes
Genome coverage:
129x
Sequencing technology:
Illumina/Nanopore

IDs: 16433671 [UID] 42088208 [GenBank] 42158768 [RefSeq]

See Genome Information for Enterobacter ludwigii

There are 261 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_029718885.1-RS_2024_04_14
Annotation Date::04/14/2024 22:10:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,918
CDSs (total)::4,799
Genes (coding)::4,713
CDSs (with protein)::4,713
Genes (RNA)::119
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::88
ncRNAs::6
Pseudo Genes (total)::87
CDSs (without protein)::86
Pseudo Genes (ambiguous residues)::0 of 87
Pseudo Genes (frameshifted)::30 of 87
Pseudo Genes (incomplete)::63 of 87
Pseudo Genes (internal stop)::24 of 87
Pseudo Genes (multiple problems)::26 of 87
Pseudo Genes (short protein)::1 of 87
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,067,008
Total ungapped length5,067,008
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_029718895.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP099311.1=NZ_CP099311.1
Plasmid unnamed1CP099312.1=NZ_CP099312.1
Plasmid unnamed2CP099313.1=NZ_CP099313.1

Assembly statistics

MoleculeTotal
Length
All5,067,008
Chromosome 5,059,346
Plasmid unnamed15,264
Plasmid unnamed22,398

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter ludwigiiEnterobacter ludwigii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019047005.1Enterobacter ludwigiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047005.1Enterobacter ludwigiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9889.4691.70
Best-match type98.9889.4691.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna