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ASM2974767v1

Organism name:
Propionibacterium freudenreichii (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FAM19024
BioSample:
SAMN33826904
BioProject:
PRJNA946676
Submitter:
Agroscope
Date:
2023/04/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_029747675.1 (latest)
RefSeq assembly accession:
GCF_029747675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 4
Expected final version:
yes
Genome coverage:
93x
Sequencing technology:
PacBio

IDs: 16436311 [UID] 42144078 [GenBank] 42168568 [RefSeq]

See Genome Information for Propionibacterium freudenreichii

There are 121 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_029747675.1-RS_2024_04_15
Annotation Date::04/15/2024 05:57:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,449
CDSs (total)::2,395
Genes (coding)::2,347
CDSs (with protein)::2,347
Genes (RNA)::54
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::48
CDSs (without protein)::48
Pseudo Genes (ambiguous residues)::0 of 48
Pseudo Genes (frameshifted)::12 of 48
Pseudo Genes (incomplete)::34 of 48
Pseudo Genes (internal stop)::5 of 48
Pseudo Genes (multiple problems)::3 of 48
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,702,819
Total ungapped length2,702,819
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_029747695.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP120878.1=NZ_CP120878.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,702,819

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Propionibacterium freudenreichiiPropionibacterium freudenreichii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000940845.1Propionibacterium freudenreichii subsp. freudenreichiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000940845.1Propionibacterium freudenreichiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9391.3393.18
Best-match type98.9391.3393.18

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna