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ASM2982358v1

Organism name:
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 20081
BioSample:
SAMN33225756
BioProject:
PRJNA933129
Submitter:
Chr-Hansen
Date:
2023/04/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_029823585.1 (latest)
RefSeq assembly accession:
GCF_029823585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAQZAR01
Assembly method:
CLC Genomics Workbench v. 20.0.4
Expected final version:
yes
Genome coverage:
81x
Sequencing technology:
Illumina

IDs: 16474091 [UID] 42227478 [GenBank] 42266478 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

There are 572 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/14/2023 07:42:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,888
CDSs (total)::1,806
Genes (coding)::1,654
CDSs (with protein)::1,654
Genes (RNA)::82
rRNAs::2, 4, 2 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 4, 2 (5S, 16S, 23S)
tRNAs::71
ncRNAs::3
Pseudo Genes (total)::152
CDSs (without protein)::152
Pseudo Genes (ambiguous residues)::0 of 152
Pseudo Genes (frameshifted)::84 of 152
Pseudo Genes (incomplete)::71 of 152
Pseudo Genes (internal stop)::44 of 152
Pseudo Genes (multiple problems)::44 of 152
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,736,289
Total ungapped length1,736,226
Gaps between scaffolds0
Number of scaffolds84
Scaffold N5059,859
Scaffold L507
Number of contigs85
Contig N5059,859
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)84

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,736,289841,736,22659,85910

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002Lactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000056065.1Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000056065.1Lactobacillus delbrueckiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8992.99
Best-match type99.9999.8992.99

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna