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ASM2983456v1

Organism name:
Enterobacter ludwigii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: I9455333cz
BioSample:
SAMN34152342
BioProject:
PRJNA954571
Submitter:
Charles University in Prague
Date:
2023/04/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_029834565.1 (latest)
RefSeq assembly accession:
GCF_029834565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 8.2
Expected final version:
yes
Genome coverage:
35.0x
Sequencing technology:
hybrid, Illumina and Nanopore MinION

IDs: 16481901 [UID] 42243588 [GenBank] 42272618 [RefSeq]

See Genome Information for Enterobacter ludwigii

There are 261 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_029834565.1-RS_2024_04_19
Annotation Date::04/19/2024 11:06:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,305
CDSs (total)::5,189
Genes (coding)::5,060
CDSs (with protein)::5,060
Genes (RNA)::116
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::84
ncRNAs::7
Pseudo Genes (total)::129
CDSs (without protein)::129
Pseudo Genes (ambiguous residues)::0 of 129
Pseudo Genes (frameshifted)::27 of 129
Pseudo Genes (incomplete)::100 of 129
Pseudo Genes (internal stop)::17 of 129
Pseudo Genes (multiple problems)::14 of 129
Pseudo Genes (short protein)::1 of 129
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,394,274
Total ungapped length5,394,274
Total number of chromosomes and plasmids6

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_029834575.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP122442.1=NZ_CP122442.1
Plasmid pI945333_1CP122444.1=NZ_CP122444.1
Plasmid pI9455333_2CP122445.1=NZ_CP122445.1
Plasmid pI9455333_ColCP122446.1=NZ_CP122446.1
Plasmid pI9455333_Col4401ICP122447.1=NZ_CP122447.1
Plasmid pI9455333_MCR10CP122443.1=NZ_CP122443.1

Assembly statistics

MoleculeTotal
Length
All5,394,274
Chromosome 5,247,533
Plasmid pI945333_16,305
Plasmid pI9455333_24,307
Plasmid pI9455333_Col2,495
Plasmid pI9455333_Col4401I3,771
Plasmid pI9455333_MCR10129,863

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter ludwigiiEnterobacter ludwigii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000818595.1Enterobacter ludwigiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000818595.1Enterobacter ludwigiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1082.9290.31
Best-match type99.1082.9290.31

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna