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ASM2985510v1

Organism name:
Lactiplantibacillus plantarum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DMC-S1
BioSample:
SAMN34217994
BioProject:
PRJNA956517
Submitter:
Kazan Federal University
Date:
2023/04/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_029855105.1 (latest)
RefSeq assembly accession:
GCF_029855105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.8
Expected final version:
yes
Genome coverage:
180.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore

IDs: 16492951 [UID] 42285778 [GenBank] 42298038 [RefSeq]

See Genome Information for Lactiplantibacillus plantarum

There are 1248 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Laboratory of Molecular Bases of Pathogenesis, Kazan Institute of Biochemistry and Biophysics, Russian Academy ... of Sciences, Kazan, Russia  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_029855105.1-RS_2024_04_23
Annotation Date::04/23/2024 04:46:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,349
CDSs (total)::3,247
Genes (coding)::3,202
CDSs (with protein)::3,202
Genes (RNA)::102
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::82
ncRNAs::4
Pseudo Genes (total)::45
CDSs (without protein)::45
Pseudo Genes (ambiguous residues)::0 of 45
Pseudo Genes (frameshifted)::24 of 45
Pseudo Genes (incomplete)::13 of 45
Pseudo Genes (internal stop)::23 of 45
Pseudo Genes (multiple problems)::13 of 45
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,474,597
Total ungapped length3,474,597
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_029855115.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP123053.1=NZ_CP123053.1
Plasmid pDMC-S1-ACP123054.1=NZ_CP123054.1
Plasmid pDMC-S1-BCP123055.1=NZ_CP123055.1

Assembly statistics

MoleculeTotal
Length
All3,474,597
Chromosome 3,376,068
Plasmid pDMC-S1-A63,256
Plasmid pDMC-S1-B35,273

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus plantarumLactiplantibacillus plantarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3488.4794.58
Best-match type99.3488.4794.58

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna