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ASM2996248v1

Organism name:
Burkholderia cepacia (b-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ZJ1
BioSample:
SAMN18838426
BioProject:
PRJNA723984
Submitter:
Beibu Gulf University
Date:
2023/05/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_029962485.1 (latest)
RefSeq assembly accession:
GCF_029962485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
FALCON v. 0.3.0
Expected final version:
no
Genome coverage:
145.0x
Sequencing technology:
PacBio Sequel

IDs: 16544451 [UID] 42542428 [GenBank] 42655888 [RefSeq]

See Genome Information for Burkholderia cepacia

There are 324 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/14/2023 07:04:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,005
CDSs (total)::6,916
Genes (coding)::6,829
CDSs (with protein)::6,829
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::4
Pseudo Genes (total)::87
CDSs (without protein)::87
Pseudo Genes (ambiguous residues)::0 of 87
Pseudo Genes (frameshifted)::48 of 87
Pseudo Genes (incomplete)::49 of 87
Pseudo Genes (internal stop)::9 of 87
Pseudo Genes (multiple problems)::17 of 87
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,704,383
Total ungapped length7,704,383
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_029962495.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP073637.1=NZ_CP073637.1
Chromosome 2CP073638.1=NZ_CP073638.1
Chromosome 3CP073639.1=NZ_CP073639.1

Assembly statistics

MoleculeTotal
Length
All7,704,383
Chromosome 13,544,176
Chromosome 23,267,341
Chromosome 3892,866

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepaciaBurkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001411495.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902832885.1Burkholderia seminalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type92.4980.3771.95
Best-match type93.9877.0974.48

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna