U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM3007843v1

Organism name:
Burkholderia vietnamiensis (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LMG16232
BioSample:
SAMN33830059
BioProject:
PRJNA946759
Submitter:
University of Manitoba
Date:
2023/05/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_030078435.1 (latest)
RefSeq assembly accession:
GCF_030078435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. 2.9
Expected final version:
yes
Genome coverage:
193.0x
Sequencing technology:
Oxford Nanopore MinION; Illumina NextSeq

IDs: 16670801 [UID] 42883108 [GenBank] 42934298 [RefSeq]

See Genome Information for Burkholderia vietnamiensis

There are 213 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from BCCM
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/26/2023 16:42:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,056
CDSs (total)::5,966
Genes (coding)::5,815
CDSs (with protein)::5,815
Genes (RNA)::90
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::4
Pseudo Genes (total)::151
CDSs (without protein)::151
Pseudo Genes (ambiguous residues)::0 of 151
Pseudo Genes (frameshifted)::74 of 151
Pseudo Genes (incomplete)::98 of 151
Pseudo Genes (internal stop)::9 of 151
Pseudo Genes (multiple problems)::27 of 151
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,739,172
Total ungapped length6,739,172
Total number of chromosomes and plasmids3

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030078445.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP120730.1=NZ_CP120730.1
Chromosome 2CP120731.1=NZ_CP120731.1
Chromosome 3CP120732.1=NZ_CP120732.1

Assembly statistics

MoleculeTotal
Length
All6,739,172
Chromosome 13,314,184
Chromosome 22,219,983
Chromosome 31,205,005

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia vietnamiensisBurkholderia vietnamiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0892.4389.88
Best-match type99.0892.4389.88

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna