U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM3025018v1

Organism name:
Halobacterium salinarum (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: UC4240
BioSample:
SAMN32788919
BioProject:
PRJNA925319
Submitter:
Universita' Cattolica del Sacro Cuore
Date:
2023/06/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030250185.1 (latest)
RefSeq assembly accession:
GCF_030250185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAQMID01
Assembly method:
SPAdes v. 3.14.0
Expected final version:
yes
Genome coverage:
124x
Sequencing technology:
Illumina MiSeq

IDs: 16854291 [UID] 43294628 [GenBank] 43418038 [RefSeq]

See Genome Information for Halobacterium salinarum

There are 28 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/25/2023 10:26:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,889
CDSs (total)::2,837
Genes (coding)::2,803
CDSs (with protein)::2,803
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::2
Pseudo Genes (total)::34
CDSs (without protein)::34
Pseudo Genes (ambiguous residues)::0 of 34
Pseudo Genes (frameshifted)::13 of 34
Pseudo Genes (incomplete)::24 of 34
Pseudo Genes (internal stop)::4 of 34
Pseudo Genes (multiple problems)::6 of 34
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,658,755
Total ungapped length2,658,755
Number of contigs216
Contig N5026,680
Contig L5032
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)216

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,658,7552162,658,75526,68000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halobacterium salinarumHalobacterium salinarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004799605.1Halobacterium salinarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004799605.1Halobacterium salinarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9473.7580.70
Best-match type98.9473.7580.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna