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ASM3025022v1

Organism name:
Halobacterium salinarum (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: UC4239
BioSample:
SAMN32788918
BioProject:
PRJNA925319
Submitter:
Universita' Cattolica del Sacro Cuore
Date:
2023/06/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030250225.1 (latest)
RefSeq assembly accession:
GCF_030250225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAQMIE01
Assembly method:
SPAdes v. 3.14.0
Expected final version:
yes
Genome coverage:
123x
Sequencing technology:
Illumina MiSeq

IDs: 16854301 [UID] 43294648 [GenBank] 43418058 [RefSeq]

See Genome Information for Halobacterium salinarum

There are 28 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/25/2023 10:16:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,781
CDSs (total)::2,729
Genes (coding)::2,702
CDSs (with protein)::2,702
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::2
Pseudo Genes (total)::27
CDSs (without protein)::27
Pseudo Genes (ambiguous residues)::0 of 27
Pseudo Genes (frameshifted)::9 of 27
Pseudo Genes (incomplete)::20 of 27
Pseudo Genes (internal stop)::7 of 27
Pseudo Genes (multiple problems)::8 of 27
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,574,459
Total ungapped length2,574,459
Number of contigs143
Contig N5031,078
Contig L5025
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)143

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,574,4591432,574,45931,07800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halobacterium salinarumHalobacterium salinarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004799605.1Halobacterium salinarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004799605.1Halobacterium salinarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1180.4885.28
Best-match type99.1180.4885.28

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna