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ASM3025028v1

Organism name:
Halobacterium salinarum (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: CECT 395
BioSample:
SAMN32788913
BioProject:
PRJNA925319
Submitter:
Universita' Cattolica del Sacro Cuore
Date:
2023/06/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030250285.1 (latest)
RefSeq assembly accession:
GCF_030250285.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAQMIJ01
Assembly method:
SPAdes v. 3.14.0
Expected final version:
yes
Genome coverage:
148x
Sequencing technology:
Illumina MiSeq

IDs: 16854331 [UID] 43294718 [GenBank] 43418738 [RefSeq]

See Genome Information for Halobacterium salinarum

There are 28 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/25/2023 10:50:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,446
CDSs (total)::2,394
Genes (coding)::2,364
CDSs (with protein)::2,364
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::2
Pseudo Genes (total)::30
CDSs (without protein)::30
Pseudo Genes (ambiguous residues)::0 of 30
Pseudo Genes (frameshifted)::9 of 30
Pseudo Genes (incomplete)::25 of 30
Pseudo Genes (internal stop)::5 of 30
Pseudo Genes (multiple problems)::8 of 30
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,129,986
Total ungapped length2,129,986
Number of contigs280
Contig N5012,196
Contig L5050
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)280

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,129,9862802,129,98612,19600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halobacterium salinarumHalobacterium salinarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004799605.1Halobacterium salinarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004799605.1Halobacterium salinarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4087.9977.14
Best-match type99.4087.9977.14

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna