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ASM3066544v1

Organism name:
Limosilactobacillus fermentum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: FUA033
BioSample:
SAMN36507063
BioProject:
PRJNA995895
Submitter:
Jiangsu Ocean University
Date:
2023/08/07
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_030665445.1 (latest)
RefSeq assembly accession:
GCF_030665445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.3
Expected final version:
yes
Genome coverage:
120x
Sequencing technology:
PacBio

IDs: 18079241 [UID] 46202938 [GenBank] 46315958 [RefSeq]

See Genome Information for Limosilactobacillus fermentum

There are 347 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/08/2023 09:23:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,198
CDSs (total)::2,122
Genes (coding)::1,980
CDSs (with protein)::1,980
Genes (RNA)::76
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::142
CDSs (without protein)::142
Pseudo Genes (ambiguous residues)::0 of 142
Pseudo Genes (frameshifted)::50 of 142
Pseudo Genes (incomplete)::74 of 142
Pseudo Genes (internal stop)::41 of 142
Pseudo Genes (multiple problems)::22 of 142
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,150,545
Total ungapped length2,150,545
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030665455.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP131058.1=NZ_CP131058.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,150,545

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Limosilactobacillus fermentumLimosilactobacillus fermentum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_005341425.1Limosilactobacillus fermentumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_005341425.1Limosilactobacillus fermentumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3081.7392.25
Best-match type99.3081.7392.25

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna