U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM3185143v1

Organism name:
Enterobacter ludwigii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 09A:C
BioSample:
SAMN37298528
BioProject:
PRJNA1013080
Submitter:
CHU Montpellier
Date:
2023/09/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_031851435.1 (latest)
RefSeq assembly accession:
GCF_031851435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. 2.9.1; Racon v. 1.5.0; Medaka v. 1.8.0
Expected final version:
yes
Genome coverage:
27x
Sequencing technology:
Illumina; Oxford Nanopore

IDs: 18750951 [UID] 47882068 [GenBank] 48085798 [RefSeq]

See Genome Information for Enterobacter ludwigii

There are 261 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/26/2023 17:49:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,873
CDSs (total)::4,755
Genes (coding)::4,689
CDSs (with protein)::4,689
Genes (RNA)::118
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::84
ncRNAs::9
Pseudo Genes (total)::66
CDSs (without protein)::66
Pseudo Genes (ambiguous residues)::0 of 66
Pseudo Genes (frameshifted)::19 of 66
Pseudo Genes (incomplete)::49 of 66
Pseudo Genes (internal stop)::18 of 66
Pseudo Genes (multiple problems)::16 of 66
Pseudo Genes (short protein)::1 of 66
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,051,079
Total ungapped length5,051,079
Total number of chromosomes and plasmids2

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_031851445.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP134638.1=NZ_CP134638.1
Plasmid unnamed1CP134637.1=NZ_CP134637.1

Assembly statistics

MoleculeTotal
Length
All5,051,079
Chromosome 4,887,092
Plasmid unnamed1163,987

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter ludwigiiEnterobacter ludwigii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019047005.1Enterobacter ludwigiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047005.1Enterobacter ludwigiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9688.9990.93
Best-match type98.9688.9990.93

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna