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ASM3223096v1

Organism name:
Streptococcus suis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ID48908
BioSample:
SAMN37410678
BioProject:
PRJNA691075
Submitter:
Faculty of Public Health
Date:
2023/09/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_032230965.1 (latest)
RefSeq assembly accession:
GCF_032230965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.4.8
Expected final version:
yes
Genome coverage:
100X
Sequencing technology:
Complete Genomics

IDs: 18940571 [UID] 48301298 [GenBank] 48427698 [RefSeq]

See Genome Information for Streptococcus suis

There are 6015 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/02/2023 13:08:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,350
CDSs (total)::2,278
Genes (coding)::2,206
CDSs (with protein)::2,206
Genes (RNA)::72
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::72
CDSs (without protein)::72
Pseudo Genes (ambiguous residues)::0 of 72
Pseudo Genes (frameshifted)::30 of 72
Pseudo Genes (incomplete)::32 of 72
Pseudo Genes (internal stop)::27 of 72
Pseudo Genes (multiple problems)::15 of 72
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,393,974
Total ungapped length2,393,974
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_032230975.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP135090.1=NZ_CP135090.1
Plasmid pID48908-SS1CP135091.1=NZ_CP135091.1
Plasmid pID48908-SS2CP135092.1=NZ_CP135092.1

Assembly statistics

MoleculeTotal
Length
All2,393,974
Chromosome 2,387,659
Plasmid pID48908-SS14,700
Plasmid pID48908-SS21,615

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus suisStreptococcus suis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000294495.1Streptococcus suis S735type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000294495.1Streptococcus suistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.6171.9186.91
Best-match type96.6171.9186.91

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna