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ASM3246348v1

Organism name:
Lactobacillus acidophilus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CICC6074
BioSample:
SAMN37638716
BioProject:
PRJNA1023025
Submitter:
ningbo university
Date:
2023/10/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_032463485.1 (latest)
RefSeq assembly accession:
GCF_032463485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
unicycler v. 0.4.8
Expected final version:
yes
Reference guided assembly:
unicycler
Genome coverage:
100.0x
Sequencing technology:
Oxford Nanopore PromethION

IDs: 19098561 [UID] 48679978 [GenBank] 48688468 [RefSeq]

See Genome Information for Lactobacillus acidophilus

There are 125 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Key Laboratory of Animal Protein Food Deep Processing Technology of Zhejiang Province

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/10/2023 13:54:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,930
CDSs (total)::1,854
Genes (coding)::1,798
CDSs (with protein)::1,798
Genes (RNA)::76
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::61
ncRNAs::3
Pseudo Genes (total)::56
CDSs (without protein)::56
Pseudo Genes (ambiguous residues)::0 of 56
Pseudo Genes (frameshifted)::35 of 56
Pseudo Genes (incomplete)::13 of 56
Pseudo Genes (internal stop)::22 of 56
Pseudo Genes (multiple problems)::12 of 56
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,992,024
Total ungapped length1,992,024
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_032463495.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP135998.1=NZ_CP135998.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,992,024

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus acidophilusLactobacillus acidophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003047065.1Lactobacillus acidophilustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003047065.1Lactobacillus acidophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9199.3398.45
Best-match type99.9199.3398.45

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna