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ASM3246597v1

Organism name:
Lacticaseibacillus rhamnosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: LMG 23550
BioSample:
SAMN37405142
BioProject:
PRJNA1017724
Submitter:
University of Life Sciences in Lublin
Date:
2023/10/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_032465975.1 (latest)
RefSeq assembly accession:
GCF_032465975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.7
Expected final version:
yes
Genome coverage:
396.1x
Sequencing technology:
Illumina MiSeq; Oxford Nanopore MinION

IDs: 19106641 [UID] 48685168 [GenBank] 48908218 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

There are 635 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/14/2023 12:44:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,949
CDSs (total)::2,870
Genes (coding)::2,817
CDSs (with protein)::2,817
Genes (RNA)::79
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::61
ncRNAs::3
Pseudo Genes (total)::53
CDSs (without protein)::53
Pseudo Genes (ambiguous residues)::0 of 53
Pseudo Genes (frameshifted)::18 of 53
Pseudo Genes (incomplete)::30 of 53
Pseudo Genes (internal stop)::13 of 53
Pseudo Genes (multiple problems)::8 of 53
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,127,641
Total ungapped length3,127,641
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_032465985.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP136119.1=NZ_CP136119.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,127,641

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus rhamnosusLacticaseibacillus rhamnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8792.6496.95
Best-match type99.8792.6496.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna