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ASM3309600v1

Organism name:
Lactobacillus xylocopicola (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: Kim32-2
BioSample:
SAMD00532386
BioProject:
PRJDB13360
Submitter:
NODAI Genome Research Center, Tokyo University of Agriculture
Date:
2023/06/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_033096005.1 (latest)
RefSeq assembly accession:
GCF_033096005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye 2.9.1-b1780
Genome coverage:
506x
Sequencing technology:
PacBio Sequel I

IDs: 19429631 [UID] 49404128 [GenBank] 49499598 [RefSeq]

See Genome Information for Lactobacillus xylocopicola

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_033096005.1-RS_2024_05_12
Annotation Date::05/12/2024 21:05:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,573
CDSs (total)::1,502
Genes (coding)::1,477
CDSs (with protein)::1,477
Genes (RNA)::71
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::56
ncRNAs::3
Pseudo Genes (total)::25
CDSs (without protein)::25
Pseudo Genes (ambiguous residues)::0 of 25
Pseudo Genes (frameshifted)::13 of 25
Pseudo Genes (incomplete)::9 of 25
Pseudo Genes (internal stop)::8 of 25
Pseudo Genes (multiple problems)::4 of 25
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,635,875
Total ungapped length1,635,875
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_033096015.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP026803.1=NZ_AP026803.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,635,875

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus xylocopicolaLactobacillus xylocopicola

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_036246345.1Lactobacillus rizhaonensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.1512.3410.47

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected