U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM3361579v1

Organism name:
Pseudomonas aeruginosa (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JBPA
BioSample:
SAMN38047953
BioProject:
PRJNA995413
Submitter:
National Institute of Agricultural Science
Date:
2023/11/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_033615795.1 (latest)
RefSeq assembly accession:
GCF_033615795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 10.1.0.119588
Expected final version:
yes
Genome coverage:
227.0x
Sequencing technology:
PacBio Sequel; Illumina NovaSeq

IDs: 19703751 [UID] 50033878 [GenBank] 50155178 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

There are 30756 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from National Institute of Agricultural Sciences

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/15/2023 13:31:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,991
CDSs (total)::6,911
Genes (coding)::6,830
CDSs (with protein)::6,830
Genes (RNA)::80
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::64
ncRNAs::4
Pseudo Genes (total)::82
CDSs (without protein)::81
Pseudo Genes (ambiguous residues)::0 of 82
Pseudo Genes (frameshifted)::30 of 82
Pseudo Genes (incomplete)::59 of 82
Pseudo Genes (internal stop)::9 of 82
Pseudo Genes (multiple problems)::14 of 82
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,352,680
Total ungapped length7,352,680
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_033615805.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP138326.1=NZ_CP138326.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,352,680

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas aeruginosaPseudomonas aeruginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_024169805.1Pseudomonas aeruginosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024169805.1Pseudomonas aeruginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4083.5095.28
Best-match type99.4083.5095.28

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna