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ASM3444018v1

Organism name:
Streptococcus suis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 2022WUSS148
BioSample:
SAMN38724730
BioProject:
PRJNA1049994
Submitter:
Nanjing Agricultural University
Date:
2023/12/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_034440185.1 (latest)
RefSeq assembly accession:
GCF_034440185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. 2
Expected final version:
yes
Genome coverage:
120.0x
Sequencing technology:
Illumina

IDs: 20252721 [UID] 51258918 [GenBank] 51349688 [RefSeq]

See Genome Information for Streptococcus suis

There are 6015 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/21/2023 12:13:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,350
CDSs (total)::2,276
Genes (coding)::2,175
CDSs (with protein)::2,175
Genes (RNA)::74
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::58
ncRNAs::4
Pseudo Genes (total)::101
CDSs (without protein)::101
Pseudo Genes (ambiguous residues)::0 of 101
Pseudo Genes (frameshifted)::38 of 101
Pseudo Genes (incomplete)::48 of 101
Pseudo Genes (internal stop)::38 of 101
Pseudo Genes (multiple problems)::21 of 101
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,464,825
Total ungapped length2,464,825
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_034440205.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP140109.1=NZ_CP140109.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,464,825

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus suisStreptococcus suis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475585.1Streptococcus suistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475585.1Streptococcus suistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.9363.9279.39
Best-match type94.9363.9279.39

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna