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ASM3532310v1

Organism name:
Enterobacter ludwigii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AG32E
BioSample:
SAMN37144499
BioProject:
PRJNA998770
Submitter:
Universidad de Leon
Date:
2024/01/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_035323105.1 (latest)
RefSeq assembly accession:
GCF_035323105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. v2.9.1-b1780
Expected final version:
yes
Genome coverage:
82.0x
Sequencing technology:
Oxford Nanopore GridION

IDs: 20697191 [UID] 52219128 [GenBank] 52526748 [RefSeq]

See Genome Information for Enterobacter ludwigii

There are 261 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Food Hygiene and Technology Department, University of Leon

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/10/2024 15:08:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,729
CDSs (total)::4,614
Genes (coding)::4,529
CDSs (with protein)::4,529
Genes (RNA)::115
rRNAs::8, 8, 8 (5S, 16S, 23S)
complete rRNAs::8, 8, 8 (5S, 16S, 23S)
tRNAs::83
ncRNAs::8
Pseudo Genes (total)::85
CDSs (without protein)::85
Pseudo Genes (ambiguous residues)::0 of 85
Pseudo Genes (frameshifted)::55 of 85
Pseudo Genes (incomplete)::30 of 85
Pseudo Genes (internal stop)::15 of 85
Pseudo Genes (multiple problems)::14 of 85
Pseudo Genes (short protein)::1 of 85
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,950,365
Total ungapped length4,950,365
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_035323115.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP133410.1=NZ_CP133410.1
Plasmid pAG32ECP133411.1=NZ_CP133411.1

Assembly statistics

MoleculeTotal
Length
All4,950,365
Chromosome 4,936,300
Plasmid pAG32E14,065

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter ludwigiiEnterobacter ludwigii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019047005.1Enterobacter ludwigiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047005.1Enterobacter ludwigiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9392.9693.09
Best-match type98.9392.9693.09

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna