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ASM3532493v1

Organism name:
Enterobacter ludwigii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ES13E
BioSample:
SAMN37486346
BioProject:
PRJNA998770
Submitter:
Universidad de Leon
Date:
2024/01/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_035324935.1 (latest)
RefSeq assembly accession:
GCF_035324935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. v2.9.1-b1780
Expected final version:
yes
Genome coverage:
59.0x
Sequencing technology:
Oxford Nanopore GridION

IDs: 20697891 [UID] 52221048 [GenBank] 52526548 [RefSeq]

See Genome Information for Enterobacter ludwigii

There are 261 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Food Hygiene and Technology Department, University of Leon

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/10/2024 15:03:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,751
CDSs (total)::4,633
Genes (coding)::4,578
CDSs (with protein)::4,578
Genes (RNA)::118
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::83
ncRNAs::10
Pseudo Genes (total)::55
CDSs (without protein)::55
Pseudo Genes (ambiguous residues)::0 of 55
Pseudo Genes (frameshifted)::28 of 55
Pseudo Genes (incomplete)::33 of 55
Pseudo Genes (internal stop)::17 of 55
Pseudo Genes (multiple problems)::18 of 55
Pseudo Genes (short protein)::1 of 55
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,938,084
Total ungapped length4,938,084
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_035324945.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP139335.1=NZ_CP139335.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,938,084

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter ludwigiiEnterobacter ludwigii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019047005.1Enterobacter ludwigiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047005.1Enterobacter ludwigiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0091.1391.03
Best-match type99.0091.1391.03

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna