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ASM3575754v1

Organism name:
Lactobacillus delbrueckii subsp. bulgaricus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: SCB0695
BioSample:
SAMN39327662
BioProject:
PRJNA1063017
Submitter:
South China Agricultural University
Date:
2024/01/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_035757545.1 (latest)
RefSeq assembly accession:
GCF_035757545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
unicycler v. v0.4.8
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq; PacBio Sequel

IDs: 20909031 [UID] 52673778 [GenBank] 52836258 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

There are 572 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from kefir grains

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/18/2024 14:10:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,188
CDSs (total)::2,064
Genes (coding)::1,948
CDSs (with protein)::1,948
Genes (RNA)::124
rRNAs::9, 9, 9 (5S, 16S, 23S)
complete rRNAs::9, 9, 9 (5S, 16S, 23S)
tRNAs::94
ncRNAs::3
Pseudo Genes (total)::116
CDSs (without protein)::116
Pseudo Genes (ambiguous residues)::0 of 116
Pseudo Genes (frameshifted)::46 of 116
Pseudo Genes (incomplete)::64 of 116
Pseudo Genes (internal stop)::24 of 116
Pseudo Genes (multiple problems)::18 of 116
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,169,586
Total ungapped length2,169,586
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_035757555.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP142106.1=NZ_CP142106.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,169,586

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckii subsp. bulgaricusLactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002278095.1Lactobacillus delbrueckii subsp. lactis DSM 20072type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002278095.1Lactobacillus delbrueckiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7782.0282.15
Best-match type98.7782.0282.15

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna