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ASM3597423v1

Organism name:
Lelliottia amnigena (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JUb66
BioSample:
SAMN38840229
BioProject:
PRJNA743218
Submitter:
Christian-Albrechts-University Kiel
Date:
2024/01/22
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_035974235.1 (latest)
RefSeq assembly accession:
GCF_035974235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
spades v. SPAdes v3.13.1
Expected final version:
yes
Genome coverage:
125x
Sequencing technology:
Illumina MiSeq + PacBio SMRT

IDs: 21029041 [UID] 52960518 [GenBank] 53172888 [RefSeq]

See Genome Information for Lelliottia amnigena

There are 33 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
not circularized

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/24/2024 12:45:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,343
CDSs (total)::4,229
Genes (coding)::4,174
CDSs (with protein)::4,174
Genes (RNA)::114
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::83
ncRNAs::9
Pseudo Genes (total)::55
CDSs (without protein)::55
Pseudo Genes (ambiguous residues)::0 of 55
Pseudo Genes (frameshifted)::27 of 55
Pseudo Genes (incomplete)::38 of 55
Pseudo Genes (internal stop)::17 of 55
Pseudo Genes (multiple problems)::20 of 55
Pseudo Genes (short protein)::1 of 55
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,572,887
Total ungapped length4,572,787
Gaps between scaffolds0
Number of scaffolds1
Scaffold N504,572,887
Scaffold L501
Number of contigs1
Contig N504,572,787
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_035974245.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP142427.1=NZ_CP142427.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 4,572,88714,572,7874,572,88710

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lelliottia amnigenaLelliottia amnigena

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019047465.1Lelliottia amnigenatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047465.1Lelliottia amnigenatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4691.2592.61
Best-match type98.4691.2592.61

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna