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ASM3654210v1

Organism name:
Pseudomonas aeruginosa (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CH1
BioSample:
SAMN39782182
BioProject:
PRJNA1072970
Submitter:
Ningbo University
Date:
2024/02/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_036542105.1 (latest)
RefSeq assembly accession:
GCF_036542105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.8
Expected final version:
yes
Genome coverage:
263.0x
Sequencing technology:
Nanopore PromethION

IDs: 21320851 [UID] 53660488 [GenBank] 53666508 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

There are 30746 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2024 23:08:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,975
CDSs (total)::6,892
Genes (coding)::6,787
CDSs (with protein)::6,787
Genes (RNA)::83
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::67
ncRNAs::4
Pseudo Genes (total)::105
CDSs (without protein)::105
Pseudo Genes (ambiguous residues)::0 of 105
Pseudo Genes (frameshifted)::34 of 105
Pseudo Genes (incomplete)::84 of 105
Pseudo Genes (internal stop)::8 of 105
Pseudo Genes (multiple problems)::21 of 105
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,330,817
Total ungapped length7,330,817
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_036542115.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP144289.1=NZ_CP144289.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,330,817

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas aeruginosaPseudomonas aeruginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_024169805.1Pseudomonas aeruginosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024169805.1Pseudomonas aeruginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7582.5293.89
Best-match type98.7582.5293.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna