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ASM3654212v1

Organism name:
Enterobacter ludwigii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: T977
BioSample:
SAMN39604747
BioProject:
PRJNA1068822
Submitter:
Zhengzhou tobacco institute of CNTC
Date:
2024/02/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_036542125.1 (latest)
RefSeq assembly accession:
GCF_036542125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 2.0
Expected final version:
yes
Genome coverage:
2076.0x
Sequencing technology:
PacBio Sequel

IDs: 21320861 [UID] 53660508 [GenBank] 53667828 [RefSeq]

See Genome Information for Enterobacter ludwigii

There are 261 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_036542125.1-RS_2024_04_21
Annotation Date::04/21/2024 14:07:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,539
CDSs (total)::4,421
Genes (coding)::4,369
CDSs (with protein)::4,369
Genes (RNA)::118
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::83
ncRNAs::10
Pseudo Genes (total)::52
CDSs (without protein)::52
Pseudo Genes (ambiguous residues)::0 of 52
Pseudo Genes (frameshifted)::23 of 52
Pseudo Genes (incomplete)::33 of 52
Pseudo Genes (internal stop)::13 of 52
Pseudo Genes (multiple problems)::15 of 52
Pseudo Genes (short protein)::1 of 52
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,772,153
Total ungapped length4,772,153
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_036542135.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP144278.1=NZ_CP144278.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,772,153

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter ludwigiiEnterobacter ludwigii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019047005.1Enterobacter ludwigiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047005.1Enterobacter ludwigiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0195.3592.05
Best-match type99.0195.3592.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna