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ASM3676299v1

Organism name:
Thermoanaerobacterium thermosaccharolyticum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 1255
BioSample:
SAMN37904761
BioProject:
PRJNA785979
Submitter:
Institute of Bioengineering, Research Center of Biotechnology of RAS
Date:
2024/02/21
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_036762995.1 (latest)
RefSeq assembly accession:
GCF_036762995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JBAIYZ01
Assembly method:
SPAdes v. V3.15.4
Expected final version:
yes
Genome coverage:
218x
Sequencing technology:
Illumina MiSeq

IDs: 21461401 [UID] 54045128 [GenBank] 54108018 [RefSeq]

See Genome Information for Thermoanaerobacterium thermosaccharolyticum

There are 10 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/16/2024 08:43:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,932
CDSs (total)::2,824
Genes (coding)::2,781
CDSs (with protein)::2,781
Genes (RNA)::108
rRNAs::3, 15, 26 (5S, 16S, 23S)
complete rRNAs::3 (5S)
partial rRNAs::15, 26 (16S, 23S)
tRNAs::59
ncRNAs::5
Pseudo Genes (total)::43
CDSs (without protein)::43
Pseudo Genes (ambiguous residues)::0 of 43
Pseudo Genes (frameshifted)::19 of 43
Pseudo Genes (incomplete)::26 of 43
Pseudo Genes (internal stop)::12 of 43
Pseudo Genes (multiple problems)::11 of 43
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,814,601
Total ungapped length2,814,601
Number of contigs155
Contig N5071,507
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)155

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,814,6011552,814,60171,50700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermoanaerobacterium thermosaccharolyticumThermoanaerobacterium thermosaccharolyticum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000145615.1Thermoanaerobacterium thermosaccharolyticum DSM 571type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000145615.1Thermoanaerobacterium thermosaccharolyticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7482.9283.78
Best-match type97.7482.9283.78

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna