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Halobacterium salinarum KBTZ02

Organism name:
Halobacterium salinarum (euryarchaeotes)
Taxonomy check:
OK
BioSample:
SAMN40460627
BioProject:
PRJNA983580
Submitter:
Nazarbayev University
Date:
2024/04/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_037482175.1 (latest)
RefSeq assembly accession:
GCF_037482175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Trycycler v. 0.5.4
Genome coverage:
1147x
Sequencing technology:
Oxford Nanopore; Illumina MiSeq

IDs: 55410788 [UID] 55410788 [GenBank] 55986348 [RefSeq]

See Genome Information for Halobacterium salinarum

There are 28 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Nazarbayev University, Biology Department, Block C4, Lab 609.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_037482175.1-RS_2024_04_05
Annotation Date::04/05/2024 19:28:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,445
CDSs (total)::2,393
Genes (coding)::2,351
CDSs (with protein)::2,351
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::2
Pseudo Genes (total)::42
CDSs (without protein)::42
Pseudo Genes (ambiguous residues)::0 of 42
Pseudo Genes (frameshifted)::23 of 42
Pseudo Genes (incomplete)::38 of 42
Pseudo Genes (internal stop)::8 of 42
Pseudo Genes (multiple problems)::23 of 42
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,283,916
Total ungapped length2,283,916
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_037482174.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP148056.1=NZ_CP148056.1
Plasmid pKBTZ02_29CP148057.1=NZ_CP148057.1
Plasmid pKBTZ02_38CP148058.1=NZ_CP148058.1

Assembly statistics

MoleculeTotal
Length
All2,283,916
Chromosome 1,959,251
Plasmid pKBTZ02_29286,683
Plasmid pKBTZ02_3837,982

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halobacterium salinarumHalobacterium salinarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004799605.1Halobacterium salinarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004799605.1Halobacterium salinarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0888.6183.29
Best-match type99.0888.6183.29

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna