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PFRJS18

Organism name:
Propionibacterium freudenreichii (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Isolate:
PFRJS18
BioSample:
SAMEA3987120
BioProject:
PRJEB14036
Submitter:
Institute of Biotechnology, Univerity of Helsinki
Date:
2017/10/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_900086895.1 (latest)
RefSeq assembly accession:
GCF_900086895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
190x

IDs: 1327891 [UID] 5343758 [GenBank] 5379878 [RefSeq]

See Genome Information for Propionibacterium freudenreichii

There are 121 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 02:36:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,394
CDSs (total)::2,340
Genes (coding)::2,283
CDSs (with protein)::2,283
Genes (RNA)::54
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::57
CDSs (without protein)::57
Pseudo Genes (ambiguous residues)::0 of 57
Pseudo Genes (frameshifted)::15 of 57
Pseudo Genes (incomplete)::45 of 57
Pseudo Genes (internal stop)::9 of 57
Pseudo Genes (multiple problems)::10 of 57
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,661,974
Total ungapped length2,661,974
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900086894.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome ILT576034.1=NZ_LT576034.1

Assembly statistics

MoleculeTotal
Length
Chromosome I2,661,974

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Propionibacterium freudenreichiiPropionibacterium freudenreichii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000940845.1Propionibacterium freudenreichii subsp. freudenreichiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000940845.1Propionibacterium freudenreichiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0891.3691.80
Best-match type99.0891.3691.80

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna