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Source database (GenBank or RefSeq) File type

PFRJS25

Organism name:: Propionibacterium freudenreichii (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Isolate:: PFRJS25
BioSample:: SAMEA4467440
BioProject:: PRJEB14036
Submitter:: Institute of Biotechnology, Univerity of Helsinki
Date:: 2017/10/09
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_900097245.1 (latest)
RefSeq assembly accession:: GCF_900097245.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 400x

IDs: 1328201 [UID] 5344398 [GenBank] 5380398 [RefSeq]

See Genome Information for Propionibacterium freudenreichii

Pathogen Detection Resources

There are 121 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900097245.1	=	GCF_900097245.1	PFRJS25	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 02:36:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,405
CDSs (total)::2,351
Genes (coding)::2,313
CDSs (with protein)::2,313
Genes (RNA)::54
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::38
CDSs (without protein)::38
Pseudo Genes (ambiguous residues)::0 of 38
Pseudo Genes (frameshifted)::6 of 38
Pseudo Genes (incomplete)::29 of 38
Pseudo Genes (internal stop)::5 of 38
Pseudo Genes (multiple problems)::2 of 38
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,702,157
Total ungapped length	2,702,157
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome I	LT618783.1	=	NZ_LT618783.1
Chromosome II	LT618784.1	=	NZ_LT618784.1

Molecule	Total Length
All	2,702,157
Chromosome I	2,666,517
Chromosome II	35,640

	ANI	Query coverage	Subject coverage
Declared type	99.02	91.04	92.87
Best-match type	99.02	91.04	92.87

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PFRJS25

See Genome Information for Propionibacterium freudenreichii

Pathogen Detection Resources

There are 121 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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