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IMG-taxon 2595698254 annotated assembly

Organism name:
Thermoanaerobacterium sp. RBIITD (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: RBIITD
BioSample:
SAMN05660242
BioProject:
PRJEB70023
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2017/09/02
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_900205865.1 (latest)
RefSeq assembly accession:
GCF_900205865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
126x

IDs: 1209791 [UID] 5044518 [GenBank] 5079318 [RefSeq]

See Genome Information for Thermoanaerobacterium sp. RBIITD

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/11/2023 14:10:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,389
CDSs (total)::3,309
Genes (coding)::3,251
CDSs (with protein)::3,251
Genes (RNA)::80
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::60
ncRNAs::5
Pseudo Genes (total)::58
CDSs (without protein)::58
Pseudo Genes (ambiguous residues)::0 of 58
Pseudo Genes (frameshifted)::33 of 58
Pseudo Genes (incomplete)::30 of 58
Pseudo Genes (internal stop)::16 of 58
Pseudo Genes (multiple problems)::19 of 58
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,403,093
Total ungapped length3,402,993
Gaps between scaffolds0
Number of scaffolds1
Scaffold N503,403,093
Scaffold L501
Number of contigs1
Contig N503,402,993
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900205864.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome ILT906662.1=NZ_LT906662.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome I3,403,09313,402,9933,403,09310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermoanaerobacterium sp. RBIITDThermoanaerobacterium sp. RBIITD

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000145615.1Thermoanaerobacterium thermosaccharolyticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.6024.7530.24

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna