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CRBO_1395_PRJEB28094_wgs

Organism name:
Oenococcus oeni (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CRBO_1395
BioSample:
SAMEA4822712
BioProject:
PRJEB28094
Submitter:
ISVV
Date:
2019/04/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_900518815.1 (latest)
RefSeq assembly accession:
GCF_900518815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ULFV01
Genome coverage:
10x

IDs: 2563531 [UID] 9303518 [GenBank] 21769038 [RefSeq]

See Genome Information for Oenococcus oeni

There are 256 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,864,509
Total ungapped length1,864,509
Number of contigs30
Contig N50141,686
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,864,509301,864,509141,68600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oenococcus oeniOenococcus oeni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000309445.1Oenococcus oeni DSM 20252 = AWRIB129type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000309445.1Oenococcus oenitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6387.5494.39
Best-match type98.6387.5494.39

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna