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Source database (GenBank or RefSeq) File type

UHGG_MGYG-HGUT-01293

Organism name:: Lacticaseibacillus rhamnosus (firmicutes)
Taxonomy check:: OK
Isolate:: MGYG-HGUT-01293
BioSample:: SAMEA5850796
BioProject:: PRJEB33885
Submitter:: EMG
Date:: 2019/08/10
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_902381635.1 (latest)
RefSeq assembly accession:: GCF_902381635.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 10x

IDs: 4347191 [UID] 13227728 [GenBank] 13338018 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

Pathogen Detection Resources

There are 635 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_902381635.1	=	GCF_902381635.1	UHGG_MGYG-HGUT-01293	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/14/2024 00:59:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,823
CDSs (total)::2,748
Genes (coding)::2,686
CDSs (with protein)::2,686
Genes (RNA)::75
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::57
ncRNAs::3
Pseudo Genes (total)::62
CDSs (without protein)::62
Pseudo Genes (ambiguous residues)::0 of 62
Pseudo Genes (frameshifted)::25 of 62
Pseudo Genes (incomplete)::33 of 62
Pseudo Genes (internal stop)::12 of 62
Pseudo Genes (multiple problems)::6 of 62
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,010,111
Total ungapped length	3,010,111
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	97.57	84.96	85.58
Best-match type	97.57	84.96	85.58

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UHGG_MGYG-HGUT-01293

See Genome Information for Lacticaseibacillus rhamnosus

Pathogen Detection Resources

There are 635 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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