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Streptococcus_thermophilus_CIRM_998

Organism name:
Streptococcus thermophilus (firmicutes)
Taxonomy check:
OK
Isolate:
STH_CIRM_998
BioSample:
SAMEA6957302
BioProject:
PRJEB36851
Submitter:
INRAE
Date:
2020/07/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_903890695.1 (latest)
RefSeq assembly accession:
GCF_903890695.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
100x

IDs: 7358921 [UID] 20372398 [GenBank] 20480398 [RefSeq]

See Genome Information for Streptococcus thermophilus

There are 565 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/14/2024 01:26:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,059
CDSs (total)::1,969
Genes (coding)::1,730
CDSs (with protein)::1,730
Genes (RNA)::90
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::4
Pseudo Genes (total)::239
CDSs (without protein)::239
Pseudo Genes (ambiguous residues)::0 of 239
Pseudo Genes (frameshifted)::162 of 239
Pseudo Genes (incomplete)::84 of 239
Pseudo Genes (internal stop)::111 of 239
Pseudo Genes (multiple problems)::98 of 239
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,982,158
Total ungapped length1,982,158
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_903890694.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR822027.1=NZ_LR822027.1
Plasmid pSTHERMOLR822028.1=NZ_LR822028.1

Assembly statistics

MoleculeTotal
Length
All1,982,158
Chromosome 1,977,763
Plasmid pSTHERMO4,395

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus thermophilusStreptococcus thermophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_010120595.1Streptococcus thermophilustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010120595.1Streptococcus thermophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9784.3879.56
Best-match type97.9784.3879.56

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna