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Source database (GenBank or RefSeq) File type

AMBV1719_hybrid

Organism name:: Lactobacillus isalae (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: AMBV1719
BioSample:: SAMEA112195920
BioProject:: PRJEB57255
Submitter:: UANTW
Date:: 2023/03/10
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_947539375.1 (latest)
RefSeq assembly accession:: GCF_947539375.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Flye+Polypolish
Genome coverage:: 189x
Sequencing technology:: ILLUMINA,OXFORD_NANOPORE

IDs: 16570131 [UID] 42621788 [GenBank] 42716658 [RefSeq]

See Genome Information for Lactobacillus isalae

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_947539375.1	=	GCF_947539375.1	AMBV1719_hybrid	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::10/22/2023 09:03:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,041
CDSs (total)::1,941
Genes (coding)::1,910
CDSs (with protein)::1,910
Genes (RNA)::100
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::76
ncRNAs::3
Pseudo Genes (total)::31
CDSs (without protein)::31
Pseudo Genes (ambiguous residues)::0 of 31
Pseudo Genes (frameshifted)::14 of 31
Pseudo Genes (incomplete)::14 of 31
Pseudo Genes (internal stop)::11 of 31
Pseudo Genes (multiple problems)::7 of 31
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,119,816
Total ungapped length	2,119,816
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	88.53	72.13	78.91

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AMBV1719_hybrid

See Genome Information for Lactobacillus isalae

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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