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ERR7163068_maxbin2_24

Organism name:
Sphingomonas paucimobilis (a-proteobacteria)
Taxonomy check:
OK
Isolate:
ERR7163068_maxbin2_24
BioSample:
SAMEA115172036
BioProject:
PRJEB52365
Submitter:
EMG
Date:
2024/04/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_964022725.1 (latest)
RefSeq assembly accession:
GCF_964022725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAXIDK01
Assembly method:
metaspades_v3.15.3
Genome coverage:
36x
Sequencing technology:
Illumina HiSeq 4000

IDs: 22292521 [UID] 56063988 [GenBank] 56119908 [RefSeq]

See Genome Information for Sphingomonas paucimobilis

There are 25 assemblies for this organism

See more

History (Show revision history)

Comment

This is a Third Party Annotation (TPA) bin derived from the primary whole genome shotgun (WGS) data set ERP132647. This sample represents a Metagenome-Assembled Genome (MAG) from the metagenomic run ERR7163068.

Global statistics

Total sequence length3,911,115
Total ungapped length3,911,115
Number of contigs63
Contig N50138,448
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)63

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,911,115633,911,115138,44800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingomonas paucimobilisSphingomonas paucimobilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016027095.1Sphingomonas paucimobilistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016027095.1Sphingomonas paucimobilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9493.5883.81
Best-match type99.9493.5883.81

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna