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ASM16609v1

Organism name:
Methanothermus fervidus DSM 2088 (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 2088
BioSample:
SAMN02232040
BioProject:
PRJNA33689
Submitter:
US DOE Joint Genome Institute (JGI-PGF)
Date:
2010/11/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
Excluded from RefSeq:
  • RefSeq annotation failed
GenBank assembly accession:
GCA_000166095.1 (latest)
RefSeq assembly accession:
GCF_000166095.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.3
Genome coverage:
30x
Sequencing technology:
454/Illumina

IDs: 275388 [UID] 201598 [GenBank] 275388 [RefSeq]

See Genome Information for Methanothermus fervidus

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 4086259
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
 David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done ... by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Methanothermus fervidus DSM 2088
collection_date::Missing
lat_lon::Missing
depth::Missing
alt_elev::Missing
country::Iceland
environment::Fresh water, Hot spring
num_replicons::1
ref_biomaterial::DSM 2088, ATCC 43054, JCM 10308
biotic_relationship::Free living
trophic_level::Missing
rel_to_oxygen::Anaerobe
isol_growth_condt::Missing
sequencing_meth::WGS
assembly::Newbler v. 2.3 (pre-release)
finishing_strategy::Finished
GOLD Stamp ID::Gi02930
Type Strain::Yes
Greengenes ID::46
Funding Program::DOE-GEBA 2007
Isolation Site::Hot solfataric spring from Iceland
Cell Shape::Rod-shaped
Motility::Motile
Temperature Range::Hyperthermophile
Temperature Optimum::83C
Gram Staining::Gram-
Diseases::None
##MIGS-Data-END##

Global statistics

Total sequence length1,243,342
Total ungapped length1,243,342
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000166105.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002278.1=NC_014658.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,243,342

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanothermus fervidus DSM 2088Methanothermus fervidus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002072215.1Methanobrevibacter arboriphilussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.270.350.18

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected