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ASM18183v1

Organism name:
Bacillus anthracis str. A0488 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: A0488
Isolate:
A
BioSample:
SAMN02470254
BioProject:
PRJNA27913
Submitter:
Los Alamos National Laboratory
Date:
2008/02/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000181835.1 (latest)
RefSeq assembly accession:
GCF_000181835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ABJC01

IDs: 229858 [UID] 229838 [GenBank] 229858 [RefSeq]

See Genome Information for Bacillus anthracis

There are 878 assemblies for this organism

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History (Show revision history)

Comment

DNA Source: Thomas Brettin, brettin@lanl.gov
This assembly represents 12x coverage of the genome.
The authors wish to acknowledge the Intelligence Technology Innovation Center for funding the sequencing and the NIH/NIAID for funding the annotation at the Pathema Bioinformatics Resource Center.
The NIAID ... funded Bioinformatics Resource Center PathoSystems Resource Integration Center (PATRIC; http://patricbrc.vbi.vt.edu/) is responsible for annotation updates of this record.  more

Global statistics

Total sequence length5,392,168
Total ungapped length5,392,168
Gaps between scaffolds0
Number of scaffolds63
Scaffold N50151,690
Scaffold L509
Number of contigs63
Contig N50151,690
Contig L509
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)63

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000181845.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Plasmid pXO1n/an/an/a1
Plasmid pXO2n/an/an/a1
unplacedn/an/an/a61

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule5,392,168635,392,168151,69000
Plasmid pXO1AllAssembled moleculeUnlocalized scaffolds182,4380182,438101182,4380182,438182,4380182,438000000
Plasmid pXO2AllAssembled moleculeUnlocalized scaffolds95,500095,50010195,500095,50095,500095,500000000
unplacedAssembled molecule5,114,230615,114,230146,27800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus anthracis str. A0488Bacillus anthracis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000742895.1Bacillus anthracis str. Vollumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000742895.1Bacillus anthracistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8897.81
Best-match type99.9999.8897.81

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna