ID 1014352 - BioProject

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Accession: PRJEB65904 ID: 1014352

EMG produced TPA metagenomics assembly of PRJNA700071 data set (Substantial overlap between symptomatic and asymptomatic genitourinary microbiota states).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA700071, and was assembled with metaspades v3. More...

Accession	PRJEB65904
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578
Submission	Registration date: 8-Sep-2023 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6844
WGS master	39
Publications
PubMed	1
PMC	1
Other datasets
BioSample	39
Assembly	39

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

39
39

Assembly	WGS	BioSample	Taxonomy
GCA_963512675.1	CAUPNB000000000	SAMEA114403198	Aerococcus urinae
GCA_963513425.1	CAUPQF000000000	SAMEA114403190	Alloprevotella tannerae
GCA_963513455.1	CAUPQN000000000	SAMEA114403201	Enterobacter roggenkampii
GCA_963512775.1	CAUPNO000000000	SAMEA114403194	Enterococcus faecalis
GCA_963512575.1	CAUPNQ000000000	SAMEA114403192	Escherichia coli
GCA_963512665.1	CAUPOB000000000	SAMEA114403205	Escherichia coli
GCA_963513385.1	CAUPQP000000000	SAMEA114403216	Escherichia coli
GCA_963513235.1	CAUPPM000000000	SAMEA114403196	Escherichia coli
GCA_963513435.1	CAUPQE000000000	SAMEA114403193	Escherichia coli
GCA_963513155.1	CAUPPL000000000	SAMEA114403212	Fannyhessea vaginae
GCA_963512735.1	CAUPNP000000000	SAMEA114403213	Gardnerella vaginalis
GCA_963512865.1	CAUPOM000000000	SAMEA114403211	Gardnerella vaginalis
GCA_963512925.1	CAUPOS000000000	SAMEA114403214	Gardnerella vaginalis
GCA_963513165.1	CAUPPR000000000	SAMEA114403215	Gardnerella vaginalis
GCA_963513375.1	CAUPQB000000000	SAMEA114403209	Gardnerella vaginalis
GCA_963512855.1	CAUPOR000000000	SAMEA114403187	Hoylesella enoeca
GCA_963512805.1	CAUPOY000000000	SAMEA114403183	Hoylesella timonensis
GCA_963513185.1	CAUPPW000000000	SAMEA114403200	Klebsiella aerogenes
GCA_963512685.1	CAUPNS000000000	SAMEA114403195	Klebsiella michiganensis
GCA_963512525.1	CAUPNU000000000	SAMEA114403199	Klebsiella pneumoniae
GCA_963512995.1	CAUPPD000000000	SAMEA114403217	Lacticaseibacillus rhamnosus
GCA_963512545.1	CAUPNW000000000	SAMEA114403204	Lactobacillus crispatus
GCA_963512725.1	CAUPNV000000000	SAMEA114403207	Lactobacillus delbrueckii
GCA_963512705.1	CAUPNC000000000	SAMEA114403180	Lactobacillus iners
GCA_963513215.1	CAUPPS000000000	SAMEA114403185	Lactobacillus jensenii
GCA_963512505.1	CAUPNY000000000	SAMEA114403186	Porphyromonas endodontalis
GCA_963512875.1	CAUPOT000000000	SAMEA114403181	Porphyromonas uenonis
GCA_963513065.1	CAUPPI000000000	SAMEA114403197	Proteus mirabilis
GCA_963513415.1	CAUPQR000000000	SAMEA114403206	Proteus mirabilis
GCA_963512815.1	CAUPOF000000000	SAMEA114403184	Scardovia wiggsiae
GCA_963512595.1	CAUPNZ000000000	SAMEA114403203	Serratia ureilytica
GCA_963513055.1	CAUPPU000000000	SAMEA114403191	Staphylococcus aureus
GCA_963513085.1	CAUPPV000000000	SAMEA114403189	Treponema denticola
GCA_963512555.1	CAUPNX000000000	SAMEA114403182	[Eubacterium] brachy
GCA_963512935.1	CAUPOL000000000	SAMEA114403208	uncultured Actinomycetaceae bacterium
GCA_963512515.1	CAUPNJ000000000	SAMEA114403188	uncultured Candidatus Saccharibacteria bacterium
GCA_963513405.1	CAUPQM000000000	SAMEA114403202	uncultured Enterobacter sp.
GCA_963513395.1	CAUPRB000000000	SAMEA114403218	uncultured Escherichia sp.
GCA_963512615.1	CAUPNT000000000	SAMEA114403210	uncultured Eubacteriales bacterium

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EMG produced TPA metagenomics assembly of PRJNA700071 data set (Substantial overlap between symptomatic and asymptomatic genitourinary microbiota states).

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