ID 1014353 - BioProject

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Accession: PRJEB65910 ID: 1014353

EMG produced TPA metagenomics assembly of PRJNA801448 data set (Metagenomic Analysis of the Urinary Microbiome of Postmenopausal Women).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA801448, and was assembled with metaspades v3. More...

Accession	PRJEB65910
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578
Submission	Registration date: 8-Sep-2023 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6882
WGS master	151
Publications
PubMed	1
PMC	1
Other datasets
BioSample	151
Assembly	151

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

151
151

Assembly	WGS	BioSample	Taxonomy
GCA_963511945.1	CAUPKL000000000	SAMEA114402759	Actinobaculum massiliense
GCA_963510255.1	CAUPEG000000000	SAMEA114402675	Actinotignum sanguinis
GCA_963511285.1	CAUPIE000000000	SAMEA114402671	Actinotignum sanguinis
GCA_963510845.1	CAUPGH000000000	SAMEA114402668	Actinotignum schaalii
GCA_963510415.1	CAUPFC000000000	SAMEA114402708	Actinotignum timonense
GCA_963509935.1	CAUPDD000000000	SAMEA114402705	Aerococcus christensenii
GCA_963512365.1	CAUPME000000000	SAMEA114402655	Aerococcus sanguinicola
GCA_963510865.1	CAUPGY000000000	SAMEA114402756	Aerococcus urinae
GCA_963510325.1	CAUPEQ000000000	SAMEA114402643	Aerococcus urinae
GCA_963510175.1	CAUPDT000000000	SAMEA114402661	Aerococcus urinae
GCA_963511925.1	CAUPKR000000000	SAMEA114402651	Allobacillus halotolerans
GCA_963510445.1	CAUPEW000000000	SAMEA114402691	Alloscardovia omnicolens
GCA_963510145.1	CAUPDS000000000	SAMEA114402713	Anaerococcus hydrogenalis
GCA_963511015.1	CAUPHB000000000	SAMEA114402787	Anaerococcus lactolyticus
GCA_963512405.1	CAUPMM000000000	SAMEA114402719	Anaerococcus prevotii
GCA_963511455.1	CAUPIX000000000	SAMEA114402725	Anaerococcus vaginalis
GCA_963510095.1	CAUPEE000000000	SAMEA114402729	Atopobium deltae
GCA_963511045.1	CAUPHD000000000	SAMEA114402707	Bifidobacterium breve
GCA_963510525.1	CAUPFB000000000	SAMEA114402773	Bifidobacterium dentium
GCA_963511515.1	CAUPIW000000000	SAMEA114402771	Bifidobacterium longum
GCA_963511955.1	CAUPKV000000000	SAMEA114402654	Bifidobacterium scardovii
GCA_963511395.1	CAUPIZ000000000	SAMEA114402745	Brevibacterium ravenspurgense
GCA_963510185.1	CAUPEF000000000	SAMEA114402716	Campylobacter ureolyticus
GCA_963511075.1	CAUPHR000000000	SAMEA114402670	Campylobacter ureolyticus
GCA_963510515.1	CAUPEY000000000	SAMEA114402652	Campylobacter ureolyticus
GCA_963510955.1	CAUPHA000000000	SAMEA114402781	Corynebacterium aurimucosum
GCA_963510605.1	CAUPFP000000000	SAMEA114402693	Corynebacterium glucuronolyticum
GCA_963511465.1	CAUPJD000000000	SAMEA114402738	Corynebacterium haemomassiliense
GCA_963511235.1	CAUPIK000000000	SAMEA114402746	Corynebacterium imitans
GCA_963512205.1	CAUPLO000000000	SAMEA114402642	Corynebacterium kroppenstedtii
GCA_963510975.1	CAUPGZ000000000	SAMEA114402761	Corynebacterium pyruviciproducens
GCA_963510125.1	CAUPEA000000000	SAMEA114402667	Corynebacterium riegelii
GCA_963512055.1	CAUPLS000000000	SAMEA114402673	Corynebacterium striatum
GCA_963509955.1	CAUPDK000000000	SAMEA114402701	Corynebacterium tuscaniense
GCA_963510935.1	CAUPHI000000000	SAMEA114402740	Dialister invisus
GCA_963510395.1	CAUPEX000000000	SAMEA114402706	Enterococcus faecalis
GCA_963510405.1	CAUPFH000000000	SAMEA114402647	Escherichia coli
GCA_963512085.1	CAUPLZ000000000	SAMEA114402648	Ezakiella coagulans
GCA_963511545.1	CAUPJH000000000	SAMEA114402739	Facklamia hominis
GCA_963510015.1	CAUPDI000000000	SAMEA114402688	Facklamia hominis
GCA_963510235.1	CAUPED000000000	SAMEA114402692	Facklamia languida
GCA_963510035.1	CAUPDC000000000	SAMEA114402703	Fannyhessea vaginae
GCA_963509975.1	CAUPDF000000000	SAMEA114402657	Fastidiosipila sanguinis
GCA_963511815.1	CAUPKI000000000	SAMEA114402762	Finegoldia magna
GCA_963512355.1	CAUPMW000000000	SAMEA114402712	Finegoldia magna
GCA_963510565.1	CAUPFM000000000	SAMEA114402676	Finegoldia magna
GCA_963510195.1	CAUPDO000000000	SAMEA114402726	Gardnerella vaginalis
GCA_963510855.1	CAUPGS000000000	SAMEA114402770	Gardnerella vaginalis
GCA_963512395.1	CAUPMF000000000	SAMEA114402645	Gardnerella vaginalis
GCA_963511845.1	CAUPKX000000000	SAMEA114402722	Gardnerella vaginalis
GCA_963511185.1	CAUPIB000000000	SAMEA114402717	Hallella colorans
GCA_963512145.1	CAUPMC000000000	SAMEA114402695	Hoylesella timonensis
GCA_963511975.1	CAUPLJ000000000	SAMEA114402682	Hoylesella timonensis
GCA_963510045.1	CAUPDP000000000	SAMEA114402672	Imtechella halotolerans
GCA_963510065.1	CAUPDV000000000	SAMEA114402663	Klebsiella oxytoca
GCA_963510355.1	CAUPET000000000	SAMEA114402660	Klebsiella pneumoniae
GCA_963512225.1	CAUPLY000000000	SAMEA114402743	Lactobacillus crispatus
GCA_963510085.1	CAUPDZ000000000	SAMEA114402720	Lactobacillus delbrueckii
GCA_963511335.1	CAUPHZ000000000	SAMEA114402779	Lactobacillus gasseri
GCA_963511485.1	CAUPIR000000000	SAMEA114402728	Lactobacillus gasseri
GCA_963510115.1	CAUPDN000000000	SAMEA114402650	Lactobacillus iners
GCA_963511155.1	CAUPHO000000000	SAMEA114402709	Lactobacillus jensenii
GCA_963511915.1	CAUPKJ000000000	SAMEA114402731	Lancefieldella parvula
GCA_963511435.1	CAUPIQ000000000	SAMEA114402732	Lancefieldella rimae
GCA_963512275.1	CAUPMT000000000	SAMEA114402710	Levyella massiliensis
GCA_963510615.1	CAUPFI000000000	SAMEA114402780	Limosilactobacillus vaginalis
GCA_963510885.1	CAUPGT000000000	SAMEA114402766	Peptoniphilus coxii
GCA_963512295.1	CAUPMV000000000	SAMEA114402727	Peptoniphilus duerdenii
GCA_963511985.1	CAUPLM000000000	SAMEA114402646	Peptoniphilus duerdenii
GCA_963511905.1	CAUPKQ000000000	SAMEA114402742	Peptoniphilus grossensis
GCA_963512045.1	CAUPLU000000000	SAMEA114402744	Peptoniphilus harei
GCA_963511895.1	CAUPKM000000000	SAMEA114402639	Peptoniphilus harei
GCA_963512075.1	CAUPLF000000000	SAMEA114402684	Peptoniphilus lacrimalis
GCA_963511255.1	CAUPIO000000000	SAMEA114402784	Porphyromonas bennonis
GCA_963510365.1	CAUPEU000000000	SAMEA114402674	Porphyromonas uenonis
GCA_963510155.1	CAUPEB000000000	SAMEA114402677	Prevotella bivia
GCA_963511365.1	CAUPIS000000000	SAMEA114402723	Prevotella corporis
GCA_963511695.1	CAUPJL000000000	SAMEA114402730	Prevotella denticola
GCA_963512425.1	CAUPMZ000000000	SAMEA114402649	Prevotella disiens
GCA_963510475.1	CAUPFN000000000	SAMEA114402714	Prevotella histicola
GCA_963510635.1	CAUPFE000000000	SAMEA114402669	Propionimicrobium lymphophilum
GCA_963512485.1	CAUPMU000000000	SAMEA114402644	Schaalia turicensis
GCA_963510745.1	CAUPGA000000000	SAMEA114402749	Sneathia sanguinegens
GCA_963511415.1	CAUPJA000000000	SAMEA114402737	Staphylococcus epidermidis
GCA_963510485.1	CAUPFL000000000	SAMEA114402685	Staphylococcus haemolyticus
GCA_963510945.1	CAUPGW000000000	SAMEA114402736	Staphylococcus hominis
GCA_963511865.1	CAUPKT000000000	SAMEA114402637	Staphylococcus simulans
GCA_963512005.1	CAUPLE000000000	SAMEA114402641	Streptococcus agalactiae
GCA_963511505.1	CAUPIU000000000	SAMEA114402772	Streptococcus anginosus
GCA_963510755.1	CAUPGE000000000	SAMEA114402748	Streptococcus oralis
GCA_963511035.1	CAUPHF000000000	SAMEA114402696	Streptococcus parasanguinis
GCA_963510995.1	CAUPHE000000000	SAMEA114402697	Trueperella bernardiae
GCA_963512195.1	CAUPLA000000000	SAMEA114402680	Ureaplasma parvum
GCA_963510675.1	CAUPGC000000000	SAMEA114402786	Varibaculum cambriense
GCA_963511875.1	CAUPKK000000000	SAMEA114402758	Varibaculum massiliense
GCA_963512305.1	CAUPMK000000000	SAMEA114402653	uncultured Actinomyces sp.
GCA_963511995.1	CAUPLB000000000	SAMEA114402640	uncultured Actinomycetaceae bacterium
GCA_963510925.1	CAUPHJ000000000	SAMEA114402711	uncultured Actinomycetaceae bacterium
GCA_963511135.1	CAUPHW000000000	SAMEA114402769	uncultured Actinomycetaceae bacterium
GCA_963510455.1	CAUPFU000000000	SAMEA114402776	uncultured Aerococcus sp.
GCA_963511095.1	CAUPHU000000000	SAMEA114402659	uncultured Anaerococcus sp.
GCA_963511175.1	CAUPIH000000000	SAMEA114402764	uncultured Anaerococcus sp.
GCA_963510915.1	CAUPHG000000000	SAMEA114402768	uncultured Anaerococcus sp.
GCA_963511405.1	CAUPJG000000000	SAMEA114402775	uncultured Anaerococcus sp.
GCA_963510385.1	CAUPFS000000000	SAMEA114402678	uncultured Anaerococcus sp.
GCA_963510665.1	CAUPFX000000000	SAMEA114402754	uncultured Anaerococcus sp.
GCA_963510575.1	CAUPFR000000000	SAMEA114402715	uncultured Anaerococcus sp.
GCA_963512035.1	CAUPLG000000000	SAMEA114402747	uncultured Anaerococcus sp.
GCA_963512375.1	CAUPMI000000000	SAMEA114402656	uncultured Anaerococcus sp.
GCA_963510875.1	CAUPGU000000000	SAMEA114402699	uncultured Arthrobacter sp.
GCA_963512315.1	CAUPMO000000000	SAMEA114402683	uncultured Bradyrhizobium sp.
GCA_963512285.1	CAUPMX000000000	SAMEA114402700	uncultured Brevibacterium sp.
GCA_963510765.1	CAUPGO000000000	SAMEA114402753	uncultured Collinsella sp.
GCA_963511885.1	CAUPKY000000000	SAMEA114402751	uncultured Coprobacillus sp.
GCA_963511345.1	CAUPIF000000000	SAMEA114402785	uncultured Corynebacteriales bacterium
GCA_963511355.1	CAUPJF000000000	SAMEA114402638	uncultured Corynebacterium sp.
GCA_963511385.1	CAUPIV000000000	SAMEA114402735	uncultured Corynebacterium sp.
GCA_963511145.1	CAUPHP000000000	SAMEA114402694	uncultured Corynebacterium sp.
GCA_963510645.1	CAUPFV000000000	SAMEA114402687	uncultured Corynebacterium sp.
GCA_963510465.1	CAUPEZ000000000	SAMEA114402702	uncultured Corynebacterium sp.
GCA_963510505.1	CAUPFK000000000	SAMEA114402763	uncultured Corynebacterium sp.
GCA_963510435.1	CAUPFA000000000	SAMEA114402689	uncultured Corynebacterium sp.
GCA_963512125.1	CAUPLQ000000000	SAMEA114402750	uncultured Corynebacterium sp.
GCA_963511825.1	CAUPKS000000000	SAMEA114402733	uncultured Corynebacterium sp.
GCA_963511535.1	CAUPJJ000000000	SAMEA114402783	uncultured Corynebacterium sp.
GCA_963512105.1	CAUPMB000000000	SAMEA114402679	uncultured Corynebacterium sp.
GCA_963510215.1	CAUPDW000000000	SAMEA114402721	uncultured Corynebacterium sp.
GCA_963511425.1	CAUPJE000000000	SAMEA114402724	uncultured Dialister sp.
GCA_963510545.1	CAUPFQ000000000	SAMEA114402767	uncultured Dialister sp.
GCA_963510625.1	CAUPFT000000000	SAMEA114402681	uncultured Eubacteriales bacterium
GCA_963511105.1	CAUPHV000000000	SAMEA114402662	uncultured Eubacteriales bacterium
GCA_963510345.1	CAUPEP000000000	SAMEA114402734	uncultured Eubacteriales bacterium
GCA_963510055.1	CAUPDR000000000	SAMEA114402665	uncultured Ezakiella sp.
GCA_963512135.1	CAUPLT000000000	SAMEA114402686	uncultured Facklamia sp.
GCA_963510375.1	CAUPES000000000	SAMEA114402755	uncultured Fastidiosipila sp.
GCA_963509965.1	CAUPDE000000000	SAMEA114402704	uncultured Gulosibacter sp.
GCA_963511115.1	CAUPHN000000000	SAMEA114402658	uncultured Helcococcus sp.
GCA_963511245.1	CAUPID000000000	SAMEA114402782	uncultured Megasphaera sp.
GCA_963510025.1	CAUPDJ000000000	SAMEA114402698	uncultured Micrococcaceae bacterium
GCA_963511525.1	CAUPIY000000000	SAMEA114402760	uncultured Mobiluncus sp.
GCA_963511495.1	CAUPJI000000000	SAMEA114402774	uncultured Mobiluncus sp.
GCA_963512095.1	CAUPLX000000000	SAMEA114402741	uncultured Peptoniphilaceae bacterium
GCA_963510105.1	CAUPEC000000000	SAMEA114402666	uncultured Porphyromonas sp.
GCA_963511375.1	CAUPIT000000000	SAMEA114402757	uncultured Prevotella sp.
GCA_963511305.1	CAUPIJ000000000	SAMEA114402664	uncultured Propionimicrobium sp.
GCA_963511205.1	CAUPIN000000000	SAMEA114402765	uncultured Propionimicrobium sp.
GCA_963511325.1	CAUPII000000000	SAMEA114402777	uncultured Streptococcus sp.
GCA_963510595.1	CAUPFJ000000000	SAMEA114402778	uncultured Streptococcus sp.
GCA_963510425.1	CAUPFD000000000	SAMEA114402718	uncultured Streptococcus sp.
GCA_963511215.1	CAUPIL000000000	SAMEA114402752	uncultured Subdoligranulum sp.
GCA_963512165.1	CAUPMA000000000	SAMEA114402690	uncultured Varibaculum sp.

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EMG produced TPA metagenomics assembly of PRJNA801448 data set (Metagenomic Analysis of the Urinary Microbiome of Postmenopausal Women).

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