ID 1040840 - BioProject

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Accession: PRJNA1040840 ID: 1040840

Metagenome-Assembled-Genomes from Microbiomes Fermenting Dairy Coproducts

To advance knowledge of microbial communities capable of fermenting agroindustrial residues into value-added products, we report metagenomes of microbial communities from six anaerobic bioreactors that were fed a mixture of ultra-filtered milk permeate and cottage cheese acid whey.

Accession	PRJNA1040840
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 15-Nov-2023 University of Wisconsin-Madison
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	122
Other datasets
BioSample	122
Assembly	122

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

122
122

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_036452275.1	JAZHSK000000000	SAMN38266539	UW_AWMP_ACET1_1	Acetobacter sp.
GCA_036452255.1	JAZHSL000000000	SAMN38266540	UW_AWMP_ACET1_2	Acetobacter sp.
GCA_036452805.1	JAZHWL000000000	SAMN38266644	UW_AWMP_PROP1_1	Acidipropionibacterium acidipropionici
GCA_036452765.1	JAZHWM000000000	SAMN38266645	UW_AWMP_PROP1_2	Acidipropionibacterium acidipropionici
GCA_036454505.1	JAZHSW000000000	SAMN38266551	UW_AWMP_ATO4_1	Atopobiaceae bacterium
GCA_036454145.1	JAZHTQ000000000	SAMN38266571	UW_AWMP_BIF2_2	Bifidobacterium crudilactis
GCA_036454125.1	JAZHTP000000000	SAMN38266570	UW_AWMP_BIF2_1	Bifidobacterium crudilactis
GCA_036454105.1	JAZHTR000000000	SAMN38266572	UW_AWMP_BIF2_3	Bifidobacterium crudilactis
GCA_036454085.1	JAZHTS000000000	SAMN38266573	UW_AWMP_BIF2_4	Bifidobacterium crudilactis
GCA_036454065.1	JAZHTT000000000	SAMN38266574	UW_AWMP_BIF2_5	Bifidobacterium crudilactis
GCA_036454045.1	JAZHTV000000000	SAMN38266576	UW_AWMP_BIF2_7	Bifidobacterium crudilactis
GCA_036454025.1	JAZHTU000000000	SAMN38266575	UW_AWMP_BIF2_6	Bifidobacterium crudilactis
GCA_036454425.1	JAZHTB000000000	SAMN38266556	UW_AWMP_BIF1_1	Bifidobacterium mongoliense
GCA_036454405.1	JAZHTD000000000	SAMN38266558	UW_AWMP_BIF1_11	Bifidobacterium mongoliense
GCA_036454365.1	JAZHTF000000000	SAMN38266560	UW_AWMP_BIF1_13	Bifidobacterium mongoliense
GCA_036454375.1	JAZHTC000000000	SAMN38266557	UW_AWMP_BIF1_10	Bifidobacterium mongoliense
GCA_036454345.1	JAZHTE000000000	SAMN38266559	UW_AWMP_BIF1_12	Bifidobacterium mongoliense
GCA_036454325.1	JAZHTG000000000	SAMN38266561	UW_AWMP_BIF1_14	Bifidobacterium mongoliense
GCA_036454305.1	JAZHTJ000000000	SAMN38266564	UW_AWMP_BIF1_4	Bifidobacterium mongoliense
GCA_036454285.1	JAZHTH000000000	SAMN38266562	UW_AWMP_BIF1_2	Bifidobacterium mongoliense
GCA_036454265.1	JAZHTI000000000	SAMN38266563	UW_AWMP_BIF1_3	Bifidobacterium mongoliense
GCA_036454245.1	JAZHTL000000000	SAMN38266566	UW_AWMP_BIF1_6	Bifidobacterium mongoliense
GCA_036454225.1	JAZHTK000000000	SAMN38266565	UW_AWMP_BIF1_5	Bifidobacterium mongoliense
GCA_036454205.1	JAZHTM000000000	SAMN38266567	UW_AWMP_BIF1_7	Bifidobacterium mongoliense
GCA_036454185.1	JAZHTO000000000	SAMN38266569	UW_AWMP_BIF1_9	Bifidobacterium mongoliense
GCA_036454165.1	JAZHTN000000000	SAMN38266568	UW_AWMP_BIF1_8	Bifidobacterium mongoliense
GCA_036453965.1	JAZHUA000000000	SAMN38266581	UW_AWMP_BIF5_1	Bifidobacterium sp.
GCA_036453885.1	JAZHUB000000000	SAMN38266582	UW_AWMP_BIF5_2	Bifidobacterium sp.
GCA_036453985.1	JAZHTX000000000	SAMN38266578	UW_AWMP_BIF3_2	Bifidobacterium subtile
GCA_036454005.1	JAZHTW000000000	SAMN38266577	UW_AWMP_BIF3_1	Bifidobacterium subtile
GCA_036453945.1	JAZHTY000000000	SAMN38266579	UW_AWMP_BIF4_1	Bifidobacterium thermacidophilum
GCA_036453925.1	JAZHTZ000000000	SAMN38266580	UW_AWMP_BIF4_2	Bifidobacterium thermacidophilum
GCA_036453905.1	JAZHUC000000000	SAMN38266583	UW_AWMP_COR1_1	Coriobacteriales bacterium
GCA_036453865.1	JAZHUD000000000	SAMN38266584	UW_AWMP_COR1_2	Coriobacteriales bacterium
GCA_036453845.1	JAZHUE000000000	SAMN38266585	UW_AWMP_EGG1_1	Eggerthellaceae bacterium
GCA_036453785.1	JAZHUF000000000	SAMN38266586	UW_AWMP_EGG1_2	Eggerthellaceae bacterium
GCA_036453425.1	JAZHUY000000000	SAMN38266605	UW_AWMP_ERY2_1	Erysipelotrichaceae bacterium
GCA_036453385.1	JAZHUZ000000000	SAMN38266606	UW_AWMP_ERY2_2	Erysipelotrichaceae bacterium
GCA_036453195.1	JAZHVS000000000	SAMN38266625	UW_AWMP_LCO4_1	Eubacteriales bacterium
GCA_036453165.1	JAZHVR000000000	SAMN38266624	UW_AWMP_LCO3_1	Eubacteriales bacterium
GCA_036453145.1	JAZHVT000000000	SAMN38266626	UW_AWMP_LCO4_2	Eubacteriales bacterium
GCA_036453125.1	JAZHVU000000000	SAMN38266627	UW_AWMP_LCO4_3	Eubacteriales bacterium
GCA_036453075.1	JAZHVV000000000	SAMN38266628	UW_AWMP_LCO4_4	Eubacteriales bacterium
GCA_036453235.1	JAZHVO000000000	SAMN38266621	UW_AWMP_LCO1_1	Eubacteriales bacterium
GCA_036454485.1	JAZHSX000000000	SAMN38266552	UW_AWMP_BACIL1_1	Heyndrickxia coagulans
GCA_036454545.1	JAZHSY000000000	SAMN38266553	UW_AWMP_BACIL1_2	Heyndrickxia coagulans
GCA_036454525.1	JAZHSZ000000000	SAMN38266554	UW_AWMP_BACIL1_3	Heyndrickxia faecalis
GCA_036454465.1	JAZHTA000000000	SAMN38266555	UW_AWMP_BACIL1_4	Heyndrickxia faecalis
GCA_036453225.1	JAZHVP000000000	SAMN38266622	UW_AWMP_LCO2_1	Lachnospiraceae bacterium
GCA_036453185.1	JAZHVQ000000000	SAMN38266623	UW_AWMP_LCO2_2	Lachnospiraceae bacterium
GCA_036453325.1	JAZHVK000000000	SAMN38266617	UW_AWMP_LACCAS1_2	Lacticaseibacillus paracasei
GCA_036453305.1	JAZHVJ000000000	SAMN38266616	UW_AWMP_LACCAS1_1	Lacticaseibacillus paracasei
GCA_036453275.1	JAZHVL000000000	SAMN38266618	UW_AWMP_LACCAS1_3	Lacticaseibacillus paracasei
GCA_036453265.1	JAZHVN000000000	SAMN38266620	UW_AWMP_LACCAS2_2	Lacticaseibacillus rhamnosus
GCA_036453285.1	JAZHVM000000000	SAMN38266619	UW_AWMP_LACCAS2_1	Lacticaseibacillus rhamnosus
GCA_036453465.1	JAZHUW000000000	SAMN38266603	UW_AWMP_ERY1_1	Lactimicrobium sp.
GCA_036453445.1	JAZHUX000000000	SAMN38266604	UW_AWMP_ERY1_2	Lactimicrobium sp.
GCA_036453345.1	JAZHVI000000000	SAMN38266615	UW_AWMP_LAC3_1	Lactobacillus amylovorus
GCA_036453405.1	JAZHVA000000000	SAMN38266607	UW_AWMP_LAC1_1	Lactobacillus delbrueckii
GCA_036455715.1	JAZHVC000000000	SAMN38266609	UW_AWMP_LAC1_3	Lactobacillus delbrueckii
GCA_036455695.1	JAZHVE000000000	SAMN38266611	UW_AWMP_LAC1_5	Lactobacillus delbrueckii
GCA_036455785.1	JAZHVB000000000	SAMN38266608	UW_AWMP_LAC1_2	Lactobacillus delbrueckii
GCA_036455765.1	JAZHVD000000000	SAMN38266610	UW_AWMP_LAC1_4	Lactobacillus delbrueckii
GCA_036455705.1	JAZHVG000000000	SAMN38266613	UW_AWMP_LAC2_2	Lactobacillus sp.
GCA_036455685.1	JAZHVF000000000	SAMN38266612	UW_AWMP_LAC2_1	Lactobacillus sp.
GCA_036453365.1	JAZHVH000000000	SAMN38266614	UW_AWMP_LAC2_3	Lactobacillus sp.
GCA_036452495.1	JAZHXA000000000	SAMN38266659	UW_AWMP_STREP2_1	Lactococcus cremoris
GCA_036452445.1	JAZHXB000000000	SAMN38266660	UW_AWMP_STREP2_2	Lactococcus cremoris
GCA_036452505.1	JAZHWX000000000	SAMN38266656	UW_AWMP_STREP1_7	Lactococcus lactis
GCA_036452485.1	JAZHWY000000000	SAMN38266657	UW_AWMP_STREP1_8	Lactococcus lactis
GCA_036452465.1	JAZHWZ000000000	SAMN38266658	UW_AWMP_STREP1_9	Lactococcus lactis
GCA_036452685.1	JAZHWQ000000000	SAMN38266649	UW_AWMP_STREP1_11	Lactococcus lactis
GCA_036452675.1	JAZHWO000000000	SAMN38266647	UW_AWMP_STREP1_1	Lactococcus lactis
GCA_036452705.1	JAZHWP000000000	SAMN38266648	UW_AWMP_STREP1_10	Lactococcus lactis
GCA_036452655.1	JAZHWR000000000	SAMN38266650	UW_AWMP_STREP1_12	Lactococcus lactis
GCA_036452605.1	JAZHWU000000000	SAMN38266653	UW_AWMP_STREP1_4	Lactococcus lactis
GCA_036452585.1	JAZHWW000000000	SAMN38266655	UW_AWMP_STREP1_6	Lactococcus lactis
GCA_036452575.1	JAZHWT000000000	SAMN38266652	UW_AWMP_STREP1_3	Lactococcus lactis
GCA_036452545.1	JAZHWV000000000	SAMN38266654	UW_AWMP_STREP1_5	Lactococcus lactis
GCA_036452555.1	JAZHWS000000000	SAMN38266651	UW_AWMP_STREP1_2	Lactococcus lactis
GCA_036453105.1	JAZHVW000000000	SAMN38266629	UW_AWMP_LENLAC1_1	Lentilactobacillus sunkii
GCA_036453065.1	JAZHVX000000000	SAMN38266630	UW_AWMP_LENLAC1_2	Lentilactobacillus sunkii
GCA_036453045.1	JAZHVY000000000	SAMN38266631	UW_AWMP_LEUC1_1	Leuconostoc gelidum
GCA_036453025.1	JAZHVZ000000000	SAMN38266632	UW_AWMP_LEUC1_2	Leuconostoc gelidum
GCA_036452985.1	JAZHWB000000000	SAMN38266634	UW_AWMP_LEUC1_4	Leuconostoc gelidum
GCA_036452965.1	JAZHWD000000000	SAMN38266636	UW_AWMP_LEUC1_6	Leuconostoc gelidum
GCA_036452995.1	JAZHWA000000000	SAMN38266633	UW_AWMP_LEUC1_3	Leuconostoc gelidum
GCA_036452945.1	JAZHWC000000000	SAMN38266635	UW_AWMP_LEUC1_5	Leuconostoc gelidum
GCA_036452925.1	JAZHWE000000000	SAMN38266637	UW_AWMP_LEUC1_7	Leuconostoc gelidum
GCA_036452905.1	JAZHWF000000000	SAMN38266638	UW_AWMP_LEUC1_8	Leuconostoc gelidum
GCA_036452885.1	JAZHWG000000000	SAMN38266639	UW_AWMP_LEUC2_1	Leuconostoc mesenteroides
GCA_036452825.1	JAZHWI000000000	SAMN38266641	UW_AWMP_LEUC2_3	Leuconostoc mesenteroides
GCA_036452785.1	JAZHWJ000000000	SAMN38266642	UW_AWMP_LEUC2_4	Leuconostoc mesenteroides
GCA_036452815.1	JAZHWK000000000	SAMN38266643	UW_AWMP_LEUC2_5	Leuconostoc mesenteroides
GCA_036452855.1	JAZHWH000000000	SAMN38266640	UW_AWMP_LEUC2_2	Leuconostoc mesenteroides
GCA_036454665.1	JAZHSR000000000	SAMN38266546	UW_AWMP_ATO3_1	Olsenella sp.
GCA_036454645.1	JAZHSQ000000000	SAMN38266545	UW_AWMP_ATO2_1	Olsenella sp.
GCA_036454625.1	JAZHSS000000000	SAMN38266547	UW_AWMP_ATO3_2	Olsenella sp.
GCA_036454605.1	JAZHST000000000	SAMN38266548	UW_AWMP_ATO3_3	Olsenella sp.
GCA_036454585.1	JAZHSU000000000	SAMN38266549	UW_AWMP_ATO3_4	Olsenella sp.
GCA_036454565.1	JAZHSV000000000	SAMN38266550	UW_AWMP_ATO3_5	Olsenella sp.
GCA_036454745.1	JAZHSM000000000	SAMN38266541	UW_AWMP_ACUT1_1	Oscillospiraceae bacterium
GCA_036454725.1	JAZHSN000000000	SAMN38266542	UW_AWMP_ACUT2_1	Oscillospiraceae bacterium
GCA_036452715.1	JAZHWN000000000	SAMN38266646	UW_AWMP_PSEU1_1	Pseudomonas helleri
GCA_036453765.1	JAZHUI000000000	SAMN38266589	UW_AWMP_ENTER1_11	Rahnella inusitata
GCA_036453665.1	JAZHUM000000000	SAMN38266593	UW_AWMP_ENTER1_15	Rahnella inusitata
GCA_036453645.1	JAZHUO000000000	SAMN38266595	UW_AWMP_ENTER1_2	Rahnella inusitata
GCA_036453625.1	JAZHUN000000000	SAMN38266594	UW_AWMP_ENTER1_16	Rahnella inusitata
GCA_036453605.1	JAZHUP000000000	SAMN38266596	UW_AWMP_ENTER1_3	Rahnella inusitata
GCA_036453585.1	JAZHUR000000000	SAMN38266598	UW_AWMP_ENTER1_5	Rahnella inusitata
GCA_036453565.1	JAZHUQ000000000	SAMN38266597	UW_AWMP_ENTER1_4	Rahnella inusitata
GCA_036453545.1	JAZHUT000000000	SAMN38266600	UW_AWMP_ENTER1_7	Rahnella inusitata
GCA_036453525.1	JAZHUS000000000	SAMN38266599	UW_AWMP_ENTER1_6	Rahnella inusitata
GCA_036453505.1	JAZHUU000000000	SAMN38266601	UW_AWMP_ENTER1_8	Rahnella inusitata
GCA_036453485.1	JAZHUV000000000	SAMN38266602	UW_AWMP_ENTER1_9	Rahnella inusitata
GCA_036453715.1	JAZHUJ000000000	SAMN38266590	UW_AWMP_ENTER1_12	Rahnella inusitata
GCA_036453725.1	JAZHUK000000000	SAMN38266591	UW_AWMP_ENTER1_13	Rahnella inusitata
GCA_036453695.1	JAZHUL000000000	SAMN38266592	UW_AWMP_ENTER1_14	Rahnella inusitata
GCA_036453825.1	JAZHUG000000000	SAMN38266587	UW_AWMP_ENTER1_1	Rahnella inusitata
GCA_036453805.1	JAZHUH000000000	SAMN38266588	UW_AWMP_ENTER1_10	Rahnella inusitata
GCA_036454705.1	JAZHSO000000000	SAMN38266543	UW_AWMP_ATO1_1	Tractidigestivibacter scatoligenes
GCA_036454685.1	JAZHSP000000000	SAMN38266544	UW_AWMP_ATO1_2	Tractidigestivibacter scatoligenes

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Metagenome-Assembled-Genomes from Microbiomes Fermenting Dairy Coproducts

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