ID 886601 - BioProject

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Accession: PRJEB56417 ID: 886601

EMG produced TPA metagenomics assembly of PRJEB42464 data set (Gut Microbiomes of European Farm Rainbow Trout).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB42464, and was assembled with megahit v1. More...

Accession	PRJEB56417
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 3-Oct-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	5715
WGS master	93
Publications
PubMed	1
PMC	1
Other datasets
BioSample	93
Assembly	93

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

93
93

Assembly	WGS	BioSample	Taxonomy
GCA_947072295.1	CAMTHQ000000000	SAMEA111477192	Aeromonas sobria
GCA_947072705.1	CAMTIY000000000	SAMEA111477200	Aeromonas sobria
GCA_947072765.1	CAMTJJ000000000	SAMEA111477116	Carnobacterium maltaromaticum
GCA_947072505.1	CAMTIH000000000	SAMEA111477189	Cetobacterium somerae
GCA_947072645.1	CAMTIZ000000000	SAMEA111477204	Deefgea rivuli
GCA_947072435.1	CAMTHY000000000	SAMEA111477159	Enterococcus cecorum
GCA_947072485.1	CAMTIB000000000	SAMEA111477158	Escherichia coli
GCA_947072795.1	CAMTJH000000000	SAMEA111477177	Kluyvera intermedia
GCA_947072095.1	CAMTGU000000000	SAMEA111477137	Lactobacillus amylovorus
GCA_947072695.1	CAMTIP000000000	SAMEA111477169	Lactobacillus crispatus
GCA_947072455.1	CAMTIC000000000	SAMEA111477162	Lactobacillus gallinarum
GCA_947072535.1	CAMTIJ000000000	SAMEA111477161	Lactobacillus johnsonii
GCA_947072725.1	CAMTJA000000000	SAMEA111477165	Lactobacillus johnsonii
GCA_947072355.1	CAMTHO000000000	SAMEA111477188	Lactococcus garvieae
GCA_947072755.1	CAMTJE000000000	SAMEA111477176	Lactococcus lactis
GCA_947072775.1	CAMTJD000000000	SAMEA111477175	Lactococcus raffinolactis
GCA_947072025.1	CAMTGD000000000	SAMEA111477118	Lelliottia amnigena
GCA_947072105.1	CAMTGO000000000	SAMEA111477125	Megasphaera elsdenii
GCA_947072575.1	CAMTIX000000000	SAMEA111477195	Morganella psychrotolerans
GCA_947072425.1	CAMTHT000000000	SAMEA111477187	Obesumbacterium proteus
GCA_947072245.1	CAMTHJ000000000	SAMEA111477150	Phascolarctobacterium succinatutens
GCA_947072525.1	CAMTII000000000	SAMEA111477208	Streptococcus pyogenes
GCA_947072785.1	CAMTJF000000000	SAMEA111477206	Streptococcus uberis
GCA_947072215.1	CAMTHL000000000	SAMEA111477186	Weissella oryzae
GCA_947072465.1	CAMTID000000000	SAMEA111477160	Weissella thailandensis
GCA_947072045.1	CAMTGJ000000000	SAMEA111477197	Yersinia ruckeri
GCA_947072675.1	CAMTIR000000000	SAMEA111477163	[Pasteurella] aerogenes
GCA_947072865.1	CAMTJO000000000	SAMEA111477183	uncultured Bacteroidales bacterium
GCA_947072275.1	CAMTGY000000000	SAMEA111477139	uncultured Bacteroidales bacterium
GCA_947072845.1	CAMTJL000000000	SAMEA111477182	uncultured Bacteroidales bacterium
GCA_947071975.1	CAMTGG000000000	SAMEA111477133	uncultured Bacteroidales bacterium
GCA_947072195.1	CAMTHI000000000	SAMEA111477124	uncultured Bacteroidales bacterium
GCA_947071995.1	CAMTGM000000000	SAMEA111477143	uncultured Bacteroidales bacterium
GCA_947071945.1	CAMTGB000000000	SAMEA111477131	uncultured Bacteroidales bacterium
GCA_947072855.1	CAMTJP000000000	SAMEA111477184	uncultured Bacteroidales bacterium
GCA_947072005.1	CAMTGF000000000	SAMEA111477121	uncultured Bacteroidales bacterium
GCA_947071985.1	CAMTGE000000000	SAMEA111477126	uncultured Bacteroidales bacterium
GCA_947072685.1	CAMTIK000000000	SAMEA111477199	uncultured Cetobacterium sp.
GCA_947072415.1	CAMTHX000000000	SAMEA111477194	uncultured Citrobacter sp.
GCA_947072085.1	CAMTGI000000000	SAMEA111477141	uncultured Clostridia bacterium
GCA_947072345.1	CAMTHM000000000	SAMEA111477153	uncultured Clostridia bacterium
GCA_947072125.1	CAMTGQ000000000	SAMEA111477123	uncultured Clostridia bacterium
GCA_947072065.1	CAMTGV000000000	SAMEA111477148	uncultured Clostridia bacterium
GCA_947072225.1	CAMTHA000000000	SAMEA111477129	uncultured Clostridia bacterium
GCA_947072145.1	CAMTGR000000000	SAMEA111477127	uncultured Clostridia bacterium
GCA_947072395.1	CAMTHR000000000	SAMEA111477152	uncultured Clostridia bacterium
GCA_947071965.1	CAMTGC000000000	SAMEA111477138	uncultured Clostridia bacterium
GCA_947072265.1	CAMTHN000000000	SAMEA111477191	uncultured Clostridia bacterium
GCA_947072015.1	CAMTGN000000000	SAMEA111477144	uncultured Clostridia bacterium
GCA_947072075.1	CAMTGK000000000	SAMEA111477132	uncultured Clostridia bacterium
GCA_947072115.1	CAMTGZ000000000	SAMEA111477136	uncultured Clostridia bacterium
GCA_947072365.1	CAMTHK000000000	SAMEA111477151	uncultured Clostridia bacterium
GCA_947072515.1	CAMTIG000000000	SAMEA111477190	uncultured Clostridium sp.
GCA_947072035.1	CAMTGH000000000	SAMEA111477120	uncultured Clostridium sp.
GCA_947072555.1	CAMTIS000000000	SAMEA111477164	uncultured Clostridium sp.
GCA_947072185.1	CAMTGX000000000	SAMEA111477146	uncultured Clostridium sp.
GCA_947072255.1	CAMTHC000000000	SAMEA111477134	uncultured Clostridium sp.
GCA_947072835.1	CAMTJM000000000	SAMEA111477172	uncultured Corynebacterium sp.
GCA_947072475.1	CAMTIA000000000	SAMEA111477193	uncultured Deefgea sp.
GCA_947072595.1	CAMTIU000000000	SAMEA111477207	uncultured Deefgea sp.
GCA_947072385.1	CAMTHV000000000	SAMEA111477156	uncultured Desulfovibrio sp.
GCA_947072135.1	CAMTGW000000000	SAMEA111477128	uncultured Dialister sp.
GCA_947072715.1	CAMTJB000000000	SAMEA111477201	uncultured Fusobacteriaceae bacterium
GCA_947072665.1	CAMTIW000000000	SAMEA111477203	uncultured Fusobacteriaceae bacterium
GCA_947072335.1	CAMTHS000000000	SAMEA111477135	uncultured Lachnospiraceae bacterium
GCA_947072325.1	CAMTHB000000000	SAMEA111477154	uncultured Lachnospiraceae bacterium
GCA_947072375.1	CAMTHU000000000	SAMEA111477180	uncultured Lachnospiraceae bacterium
GCA_947072625.1	CAMTIO000000000	SAMEA111477174	uncultured Lactobacillus sp.
GCA_947072545.1	CAMTIF000000000	SAMEA111477166	uncultured Lactobacillus sp.
GCA_947072635.1	CAMTIT000000000	SAMEA111477170	uncultured Lactobacillus sp.
GCA_947072825.1	CAMTJN000000000	SAMEA111477173	uncultured Lactobacillus sp.
GCA_947072315.1	CAMTHF000000000	SAMEA111477157	uncultured Lactobacillus sp.
GCA_947072655.1	CAMTIQ000000000	SAMEA111477168	uncultured Lactobacillus sp.
GCA_947072445.1	CAMTHZ000000000	SAMEA111477205	uncultured Mycoplasmataceae bacterium
GCA_947072615.1	CAMTIL000000000	SAMEA111477167	uncultured Nosocomiicoccus sp.
GCA_947072155.1	CAMTGT000000000	SAMEA111477142	uncultured Oribacterium sp.
GCA_947072565.1	CAMTIM000000000	SAMEA111477196	uncultured Peptostreptococcaceae bacterium
GCA_947071955.1	CAMTGL000000000	SAMEA111477117	uncultured Plesiomonas sp.
GCA_947072805.1	CAMTJK000000000	SAMEA111477179	uncultured Prevotella sp.
GCA_947072235.1	CAMTHG000000000	SAMEA111477122	uncultured Prevotella sp.
GCA_947072175.1	CAMTHE000000000	SAMEA111477147	uncultured Prevotella sp.
GCA_947072285.1	CAMTHD000000000	SAMEA111477185	uncultured Prevotella sp.
GCA_947072055.1	CAMTGP000000000	SAMEA111477140	uncultured Prevotellaceae bacterium
GCA_947072495.1	CAMTIE000000000	SAMEA111477198	uncultured Rhodobacteraceae bacterium
GCA_947072605.1	CAMTIV000000000	SAMEA111477202	uncultured Shewanella sp.
GCA_947072165.1	CAMTGS000000000	SAMEA111477130	uncultured Solobacterium sp.
GCA_947072585.1	CAMTIN000000000	SAMEA111477171	uncultured Streptococcus sp.
GCA_947072305.1	CAMTHP000000000	SAMEA111477145	uncultured Veillonellaceae bacterium
GCA_947072405.1	CAMTHW000000000	SAMEA111477155	uncultured Verrucomicrobiota bacterium
GCA_947072205.1	CAMTHH000000000	SAMEA111477149	uncultured bacterium
GCA_947072815.1	CAMTJI000000000	SAMEA111477119	uncultured bacterium
GCA_947072745.1	CAMTJG000000000	SAMEA111477178	uncultured bacterium
GCA_947072735.1	CAMTJC000000000	SAMEA111477181	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJEB42464 data set (Gut Microbiomes of European Farm Rainbow Trout).

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